Os06g0111300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0111300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.65 | 0.369 | 10.9 | 0.364 | 0.93 | 0.781 | -0.88 | 0.171 | -0.138 | 20.8 | 25.79 | 10 | -- | -- |
| 61.41 | 0.368 | 10.9 | 0.35 | 0.934 | 0.81 | -0.895 | -- | -0.129 | 20.8 | 26.3 | 12 | -- | -- |
| 64.09 | 0.376 | 10.9 | 0.391 | 0.935 | 0.811 | -- | 0.117 | -0.126 | 20.8 | 26.3 | 8 | -- | -- |
| 64.08 | 0.375 | 10.9 | 0.38 | 0.936 | 0.803 | -- | -- | -0.129 | 20.8 | 26.3 | 12 | -- | -- |
| 98.94 | 0.463 | 10.9 | 0.404 | -- | 0.964 | -- | -0.27 | -0.187 | -- | 24.19 | 375 | -- | -- |
| 71.63 | 0.397 | 10.9 | 0.468 | 0.973 | -- | -0.824 | -- | -0.103 | 19.8 | -- | -- | -- | -- |
| 73.57 | 0.402 | 10.9 | 0.49 | 0.975 | -- | -- | -- | -0.103 | 19.7 | -- | -- | -- | -- |
| 98.34 | 0.462 | 10.9 | 0.312 | -- | 0.957 | -- | -- | -0.215 | -- | 24.19 | 402 | -- | -- |
| 67.77 | 0.386 | 10.9 | -- | 0.935 | 0.893 | -- | -- | -0.173 | 20.9 | 26.3 | 12 | -- | -- |
| 124.95 | 0.522 | 10.9 | 0.478 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 79.9 | 0.418 | 10.9 | -- | 0.972 | -- | -- | -- | -0.158 | 19.8 | -- | -- | -- | -- |
| 100.81 | 0.468 | 10.9 | -- | -- | 1.01 | -- | -- | -0.255 | -- | 24.1 | 405 | -- | -- |
| 130.97 | 0.534 | 10.9 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.80 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 4 | 57.10 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 16 |
| 14 | 57.71 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 15 | 57.75 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 44 | 58.70 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 46 | 58.78 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 61 | 59.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 78 | 59.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 125 | 60.16 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 138 | 60.27 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 148 | 60.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 191 | 60.69 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 194 | 60.75 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 204 | 60.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 220 | 60.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 246 | 61.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 264 | 61.12 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 18 |
| 293 | 61.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 296 | 61.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 317 | 61.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 352 | 61.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 357 | 61.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 385 | 61.45 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 386 | 61.45 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 410 | 61.49 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 425 | 61.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 451 | 61.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 519 | 61.69 | temperature | 30 | 10 | < th | dose independent | rect. | 5 | 18 |
| 553 | 61.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 560 | 61.77 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 573 | 61.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 633 | 61.87 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 808 | 62.14 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 819 | 62.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 896 | 62.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |