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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0111200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0239) R2 : 0.00796
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0962 (0.0503) R2dN8 : 0.0103 R2N8 : 0.00796
σ : 0.45
deviance : 92.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.57 0.437 3.41 -0.388 0.0345 1.5 0.0523 -6.29 -0.0629 3.07 999.9 865 -- --
89.68 0.444 3.35 -0.0232 0.0632 0.412 -0.0065 -- -0.0778 1.25 998.3 2341 -- --
86.58 0.433 3.41 -0.388 0.0348 1.5 -- -6.27 -0.0633 3.07 999.9 865 -- --
89.68 0.444 3.35 -0.0229 0.0633 0.412 -- -- -0.0778 1.26 998.3 2341 -- --
86.65 0.434 3.41 -0.39 -- 1.51 -- -6.33 -0.0625 -- 999.9 865 -- --
92.68 0.451 3.35 0.0207 0.0567 -- -0.0258 -- -0.0949 1.65 -- -- -- --
92.68 0.451 3.35 0.0215 0.0568 -- -- -- -0.0948 1.7 -- -- -- --
89.93 0.444 3.35 -0.0201 -- 0.408 -- -- -0.0767 -- 998.3 2341 -- --
89.69 0.444 3.35 -- 0.0628 0.409 -- -- -0.0755 1.25 998.3 2341 -- --
92.88 0.45 3.35 0.0238 -- -- -- -- -0.0935 -- -- -- -- --
92.69 0.45 3.35 -- 0.0572 -- -- -- -0.0972 1.72 -- -- -- --
89.09 0.44 3.35 -- -- 0.381 -- -- -0.0609 -- 1001 784 -- --
92.89 0.45 3.35 -- -- -- -- -- -0.0962 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.23 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 82.61 radiation 1.0 14400 < th dose dependent rect. 3 1
4 82.64 temperature 20.0 30 > th dose dependent rect. 2 1
5 82.69 atmosphere 1005.0 30 > th dose dependent rect. 2 1
7 82.71 temperature 20.0 30 > th dose independent rect. 2 1
10 82.77 wind 3.0 30 < th dose dependent rect. 2 1
12 82.78 humidity 90.0 30 > th dose independent rect. 2 1
13 82.78 atmosphere 1005.0 30 > th dose independent rect. 2 1
21 82.82 wind 3.0 30 < th dose independent rect. 2 1
27 82.83 wind 9.0 1440 < th dose independent rect. 3 1
28 82.83 temperature 10.0 1440 > th dose independent rect. 3 1
31 82.83 temperature 30.0 1440 < th dose independent rect. 3 1
35 82.83 humidity 50.0 1440 > th dose independent rect. 3 1
44 82.83 atmosphere 995.0 1440 > th dose independent rect. 3 1
45 82.83 radiation 1.0 1440 < th dose independent rect. 3 1
65 82.83 temperature 10.0 1440 > th dose independent rect. 4 23
74 82.84 humidity 80.0 30 > th dose dependent rect. 2 1
86 82.89 temperature 10.0 30 > th dose independent rect. 2 1
88 82.89 temperature 30.0 30 < th dose independent rect. 2 1
89 82.89 humidity 50.0 30 > th dose independent rect. 2 1
93 82.89 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 82.89 radiation 1.0 30 < th dose independent rect. 2 1
100 82.89 precipitation 0.1 30 < th dose independent rect. 2 1
101 82.89 temperature 10.0 30 > th dose independent rect. 3 23
102 82.89 radiation 1.0 30 < th dose dependent rect. 2 1
108 82.89 precipitation 0.1 30 < th dose dependent rect. 2 1
113 83.11 atmosphere 1015.0 30 < th dose dependent rect. 2 1
117 83.26 atmosphere 1000.0 720 > th dose independent rect. 23 16
119 83.29 temperature 30.0 30 < th dose dependent rect. 2 1
120 83.32 atmosphere 1000.0 10 < th dose independent rect. 2 2
123 83.36 atmosphere 1000.0 10 < th dose dependent rect. 2 2
124 83.37 wind 1.0 30 > th dose independent rect. 2 1
134 83.54 atmosphere 1000.0 90 < th dose independent rect. 2 1
139 83.56 atmosphere 1000.0 90 < th dose dependent rect. 2 1
144 83.60 precipitation 0.1 30 < th dose independent rect. 3 23
146 83.60 precipitation 0.1 30 < th dose dependent rect. 3 23
223 85.02 wind 9.0 30 < th dose independent rect. 3 23
243 85.62 atmosphere 1000.0 720 > th dose independent rect. 3 8
251 85.82 atmosphere 1000.0 720 > th dose independent rect. 16 23
254 85.92 atmosphere 1000.0 720 < th dose independent rect. 21 18
256 85.93 atmosphere 1000.0 720 < th dose independent rect. 23 15
266 85.99 atmosphere 1000.0 720 < th dose independent rect. 16 21
275 86.11 atmosphere 1000.0 720 < th dose independent sin 5 NA
276 86.12 atmosphere 1000.0 720 > th dose independent sin 5 NA
290 86.23 atmosphere 1000.0 720 > th dose independent rect. 3 23
292 86.25 humidity 50.0 30 > th dose independent rect. 3 23
368 86.68 atmosphere 1000.0 720 > th dose independent sin 11 NA
371 86.69 atmosphere 995.0 30 > th dose dependent rect. 3 23
380 86.75 atmosphere 1000.0 720 > th dose independent rect. 23 23
384 86.78 atmosphere 1000.0 720 > th dose independent rect. 7 8
392 86.83 atmosphere 1000.0 720 < th dose independent no NA NA
400 86.86 atmosphere 1000.0 720 > th dose independent rect. 3 17
401 86.86 atmosphere 1000.0 720 > th dose independent rect. 8 23
402 86.86 atmosphere 1000.0 720 < th dose independent rect. 5 23
413 86.89 atmosphere 1000.0 720 < th dose independent sin 11 NA
420 86.91 atmosphere 1000.0 720 < th dose independent rect. 11 23
421 86.92 atmosphere 1000.0 720 > th dose independent no NA NA
425 86.93 atmosphere 1000.0 720 > th dose independent rect. 10 23
436 86.97 atmosphere 1000.0 720 > th dose independent rect. 17 16
438 86.97 atmosphere 1000.0 720 > th dose independent rect. 21 23
442 86.99 atmosphere 1000.0 720 > th dose independent rect. 13 22
449 87.02 atmosphere 1000.0 720 > th dose independent rect. 13 17
466 87.07 temperature 25.0 270 > th dose independent rect. 23 4
492 87.15 atmosphere 1000.0 720 > th dose independent rect. 3 19
528 87.26 atmosphere 1000.0 720 < th dose independent rect. 5 9
538 87.30 atmosphere 1005.0 30 < th dose dependent rect. 13 21
572 87.38 atmosphere 1000.0 720 > th dose independent rect. 10 20
577 87.39 atmosphere 1000.0 720 > th dose independent rect. 5 23
604 87.49 humidity 90.0 90 < th dose independent rect. 2 1
607 87.49 atmosphere 1005.0 30 < th dose dependent rect. 13 16
620 87.53 atmosphere 1000.0 1440 > th dose independent rect. 1 1
625 87.54 atmosphere 1000.0 720 > th dose independent rect. 17 8
656 87.60 atmosphere 1000.0 1440 > th dose independent rect. 22 4
684 87.66 atmosphere 1000.0 1440 < th dose independent rect. 1 1
685 87.66 atmosphere 1000.0 1440 < th dose independent rect. 23 3
688 87.66 atmosphere 1005.0 30 < th dose dependent rect. 13 19
713 87.69 atmosphere 1000.0 720 > th dose independent rect. 3 12
723 87.70 atmosphere 1000.0 720 > th dose independent rect. 8 17
731 87.72 atmosphere 1000.0 1440 > th dose independent rect. 22 1
734 87.72 atmosphere 1000.0 90 < th dose independent rect. 1 13
743 87.73 atmosphere 1000.0 720 > th dose independent rect. 10 16
778 87.78 temperature 30.0 30 < th dose independent rect. 3 23
790 87.79 humidity 80.0 14400 < th dose dependent rect. 1 8
840 87.91 humidity 80.0 14400 < th dose dependent rect. 20 14
863 87.97 temperature 25.0 270 > th dose dependent rect. 23 4
909 88.05 atmosphere 1000.0 720 < th dose dependent rect. 24 17
963 88.14 atmosphere 1005.0 30 < th dose dependent rect. 13 12