Os06g0111100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0111100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.73 | 0.387 | 6.97 | 1.53 | 0.603 | -0.894 | 0.646 | 1.11 | 0.384 | 16.3 | 79.96 | 1380 | -- | -- |
| 68.83 | 0.386 | 6.98 | 1.47 | 0.608 | -0.85 | 0.54 | -- | 0.376 | 16.3 | 80 | 1380 | -- | -- |
| 68.72 | 0.386 | 6.98 | 1.54 | 0.61 | -0.924 | -- | 1.07 | 0.367 | 16.2 | 79 | 1373 | -- | -- |
| 69.62 | 0.389 | 6.98 | 1.47 | 0.595 | -0.862 | -- | -- | 0.354 | 16.4 | 78.85 | 1367 | -- | -- |
| 85.28 | 0.43 | 6.96 | 1.6 | -- | -1.12 | -- | 1.2 | 0.394 | -- | 79 | 1262 | -- | -- |
| 77.37 | 0.412 | 6.99 | 1.42 | 0.642 | -- | 0.714 | -- | 0.314 | 16.3 | -- | -- | -- | -- |
| 78.78 | 0.416 | 6.99 | 1.42 | 0.647 | -- | -- | -- | 0.318 | 16.3 | -- | -- | -- | -- |
| 85.98 | 0.432 | 6.97 | 1.48 | -- | -1.03 | -- | -- | 0.356 | -- | 77.82 | 1262 | -- | -- |
| 118.76 | 0.508 | 6.98 | -- | 0.659 | -0.922 | -- | -- | 0.3 | 16 | 89 | 1538 | -- | -- |
| 101.31 | 0.47 | 6.99 | 1.4 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 132.29 | 0.538 | 7.03 | -- | 0.62 | -- | -- | -- | 0.16 | 16.4 | -- | -- | -- | -- |
| 134.55 | 0.54 | 6.99 | -- | -- | -1 | -- | -- | 0.268 | -- | 87.76 | 1277 | -- | -- |
| 152.95 | 0.577 | 7.02 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 2 | 66.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 5 | 66.39 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 8 | 66.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 26 | 66.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 33 | 66.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 89 | 67.16 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 125 | 67.45 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 130 | 67.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 144 | 67.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 145 | 67.56 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 232 | 67.89 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 272 | 68.04 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 275 | 68.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 285 | 68.07 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 286 | 68.07 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 301 | 68.09 | humidity | 90 | 720 | > th | dose dependent | sin | 19 | NA |
| 306 | 68.11 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 316 | 68.13 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 321 | 68.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 425 | 68.30 | humidity | 70 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 434 | 68.32 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 484 | 68.40 | humidity | 70 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 526 | 68.46 | humidity | 80 | 720 | > th | dose dependent | sin | 16 | NA |
| 529 | 68.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 533 | 68.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 538 | 68.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 566 | 68.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 583 | 68.54 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 658 | 68.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 682 | 68.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 684 | 68.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 761 | 68.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 762 | 68.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 763 | 68.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 768 | 68.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 796 | 68.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 916 | 68.98 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 947 | 69.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 951 | 69.02 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |