Os06g0110200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Late embryogenesis abundant (LEA) group 1 family protein.
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Os06g0110200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Late embryogenesis abundant (LEA) group 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 257.96 | 0.755 | 3.29 | -0.445 | 0.333 | 2.06 | 1.4 | -6.04 | -0.33 | 12.4 | 17.6 | 316 | 4.66 | -- |
| 281.96 | 0.782 | 3.3 | -0.503 | 0.191 | 2.48 | -0.126 | -- | -0.349 | 10.8 | 13.45 | 315 | 4.46 | -- |
| 264.3 | 0.757 | 3.28 | -0.394 | 0.363 | 2.03 | -- | -5.38 | -0.314 | 12.2 | 19.82 | 313 | 4.66 | -- |
| 282.03 | 0.782 | 3.3 | -0.497 | 0.189 | 2.49 | -- | -- | -0.354 | 10.8 | 13.45 | 315 | 4.54 | -- |
| 268.31 | 0.763 | 3.31 | -0.436 | -- | 2.35 | -- | -3.84 | -0.36 | -- | 13.79 | 363 | 4.57 | -- |
| 335.54 | 0.859 | 3.29 | -0.516 | 0.83 | -- | -0.201 | -- | -0.344 | 12.3 | -- | -- | -- | -- |
| 335.71 | 0.858 | 3.29 | -0.524 | 0.831 | -- | -- | -- | -0.345 | 12.3 | -- | -- | -- | -- |
| 283.41 | 0.784 | 3.31 | -0.485 | -- | 2.64 | -- | -- | -0.356 | -- | 12.21 | 315 | 4.39 | -- |
| 288.45 | 0.791 | 3.29 | -- | 0.199 | 2.51 | -- | -- | -0.298 | 11 | 14.03 | 315 | 4.53 | -- |
| 379.13 | 0.91 | 3.31 | -0.552 | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
| 342.95 | 0.866 | 3.28 | -- | 0.838 | -- | -- | -- | -0.287 | 12.3 | -- | -- | -- | -- |
| 289.96 | 0.793 | 3.29 | -- | -- | 2.69 | -- | -- | -0.302 | -- | 13.17 | 315 | 4.36 | -- |
| 387.16 | 0.918 | 3.29 | -- | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 261.73 | radiation | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 3 | 263.24 | radiation | 30 | 270 | < th | dose independent | sin | 11 | NA |
| 6 | 264.01 | humidity | 80 | 90 | < th | dose dependent | sin | 6 | NA |
| 9 | 264.48 | humidity | 70 | 10 | < th | dose dependent | sin | 6 | NA |
| 12 | 264.96 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 1 |
| 30 | 265.64 | radiation | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 55 | 266.70 | radiation | 30 | 30 | > th | dose independent | rect. | 15 | 21 |
| 56 | 266.88 | radiation | 30 | 10 | > th | dose independent | sin | 8 | NA |
| 83 | 268.06 | radiation | 20 | 30 | > th | dose dependent | sin | 8 | NA |
| 99 | 268.24 | humidity | 80 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 113 | 268.27 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 4 |
| 155 | 268.88 | radiation | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 156 | 268.91 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 5 |
| 219 | 270.56 | radiation | 20 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 239 | 270.82 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 7 |
| 351 | 271.89 | radiation | 40 | 30 | > th | dose independent | rect. | 13 | 23 |
| 514 | 273.53 | radiation | 20 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 534 | 273.65 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 574 | 273.87 | radiation | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 616 | 274.12 | humidity | 60 | 90 | < th | dose independent | rect. | 8 | 7 |
| 657 | 274.47 | radiation | 40 | 10 | < th | dose independent | sin | 9 | NA |
| 690 | 274.85 | humidity | 50 | 10 | > th | dose dependent | sin | 2 | NA |
| 721 | 275.00 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 12 |
| 722 | 275.03 | humidity | 70 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 750 | 275.08 | humidity | 60 | 90 | < th | dose independent | sin | 5 | NA |
| 880 | 276.02 | humidity | 50 | 90 | > th | dose dependent | sin | 3 | NA |
| 965 | 276.48 | radiation | 30 | 30 | < th | dose independent | rect. | 3 | 10 |
| 991 | 276.59 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 2 |