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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0110100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : OSEYA1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0181) R2 : 0.00234
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0394 (0.0381) R2dN8 : 0.00302 R2N8 : 0.00234
σ : 0.34
deviance : 53.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.19 0.29 12.3 -0.0939 0.402 -0.519 -0.0468 0.248 -0.147 14.4 24.9 865 -- --
38.14 0.288 12.3 -0.0209 0.404 -0.516 0.00267 -- -0.131 14.5 24.7 904 -- --
38.07 0.287 12.3 -0.0837 0.402 -0.513 -- 0.201 -0.146 14.6 24.7 894 -- --
38.09 0.287 12.3 -0.0285 0.417 -0.513 -- -- -0.128 14.7 24.78 928 -- --
44.27 0.312 12.2 0.0629 -- -0.299 -- -0.0716 -0.0904 -- 24.8 1729 -- --
46.68 0.32 12.2 0.139 0.336 -- -0.191 -- 0.0631 16.4 -- -- -- --
46.77 0.32 12.2 0.138 0.334 -- -- -- 0.0621 16.3 -- -- -- --
44.3 0.311 12.2 0.043 -- -0.302 -- -- -0.0973 -- 24.7 1748 -- --
38.11 0.288 12.3 -- 0.416 -0.506 -- -- -0.123 14.7 24.77 928 -- --
52.79 0.339 12.2 0.125 -- -- -- -- 0.0532 -- -- -- -- --
47.28 0.322 12.2 -- 0.331 -- -- -- 0.0467 16.3 -- -- -- --
42.88 0.306 12.3 -- -- -0.322 -- -- -0.103 -- 25.3 1747 -- --
53.2 0.34 12.2 -- -- -- -- -- 0.0394 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.09 temperature 20 270 > th dose dependent rect. 18 15
21 38.37 temperature 20 90 > th dose dependent sin 8 NA
32 38.82 temperature 25 90 > th dose independent rect. 5 22
45 39.05 temperature 25 720 > th dose independent rect. 12 20
54 39.14 temperature 10 10 > th dose dependent sin 7 NA
66 39.21 temperature 25 720 < th dose independent rect. 14 21
82 39.33 temperature 25 270 > th dose independent rect. 5 3
99 39.38 temperature 25 90 > th dose independent sin 8 NA
103 39.40 temperature 30 90 < th dose dependent sin 7 NA
109 39.45 temperature 25 1440 < th dose independent rect. 11 20
113 39.46 temperature 25 1440 < th dose independent rect. 20 20
114 39.46 temperature 25 720 < th dose independent rect. 9 23
117 39.47 temperature 25 90 > th dose independent rect. 11 23
121 39.48 temperature 25 720 > th dose independent rect. 19 22
130 39.49 temperature 25 270 > th dose dependent rect. 3 5
142 39.51 temperature 25 720 < th dose independent rect. 5 23
168 39.56 temperature 25 720 < th dose independent no NA NA
181 39.56 temperature 25 720 < th dose independent rect. 24 23
185 39.57 temperature 25 1440 > th dose independent rect. 21 19
196 39.58 temperature 25 90 > th dose independent rect. 13 23
205 39.59 temperature 25 90 < th dose independent rect. 15 22
206 39.59 temperature 25 90 > th dose independent rect. 17 23
225 39.61 temperature 25 270 > th dose independent rect. 17 16
253 39.64 temperature 25 90 < th dose independent rect. 11 22
258 39.65 temperature 25 90 > th dose independent no NA NA
276 39.66 temperature 25 720 > th dose independent rect. 5 23
286 39.67 temperature 25 1440 < th dose independent rect. 2 23
290 39.67 temperature 10 720 > th dose dependent rect. 20 5
304 39.69 temperature 25 720 > th dose independent no NA NA
327 39.71 temperature 25 720 > th dose independent rect. 2 23
370 39.75 temperature 25 1440 > th dose independent rect. 11 17
445 39.81 temperature 25 1440 < th dose independent sin 15 NA
542 39.89 temperature 25 90 < th dose independent no NA NA
553 39.89 temperature 25 90 < th dose independent rect. 9 23
554 39.89 temperature 10 270 > th dose dependent rect. 3 22
584 39.93 temperature 25 1440 < th dose independent sin 5 NA
595 39.93 temperature 25 90 < th dose independent rect. 23 23
641 39.98 temperature 25 4320 < th dose independent rect. 20 3
642 39.98 temperature 25 4320 < th dose independent rect. 19 5
660 40.00 temperature 25 1440 > th dose independent sin 16 NA
696 40.02 temperature 25 90 < th dose independent rect. 19 23
698 40.03 temperature 25 90 < th dose independent sin 8 NA
735 40.06 temperature 25 90 < th dose independent rect. 17 16
743 40.07 temperature 25 1440 > th dose independent sin 5 NA
783 40.11 temperature 25 4320 > th dose independent rect. 21 2
790 40.11 temperature 20 1440 > th dose dependent rect. 23 2
791 40.11 temperature 20 1440 > th dose dependent rect. 22 8
812 40.13 temperature 25 4320 > th dose independent rect. 19 5
861 40.15 temperature 20 1440 > th dose dependent rect. 5 1
979 40.22 temperature 25 90 < th dose independent rect. 7 23
993 40.23 temperature 25 90 < th dose independent rect. 21 23