Os06g0110000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DWARF3 (Fragment).
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Os06g0110000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DWARF3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.1 | 0.57 | 8.8 | -1.2 | 1.5 | -1.66 | 0.593 | 1.55 | -0.302 | 1.2 | 84.23 | 1050 | -- | -- |
| 149.25 | 0.569 | 8.8 | -1.41 | 1.52 | -1.66 | 0.935 | -- | -0.247 | 1.25 | 94 | 1071 | -- | -- |
| 148.33 | 0.567 | 8.8 | -1.19 | 1.49 | -1.67 | -- | 1.95 | -0.3 | 1.22 | 84.49 | 1046 | -- | -- |
| 152.59 | 0.575 | 8.8 | -1.43 | 1.51 | -1.68 | -- | -- | -0.245 | 1.32 | 94.3 | 1068 | -- | -- |
| 175.45 | 0.617 | 8.79 | -1.51 | -- | -1.86 | -- | 0.184 | -0.252 | -- | 140.5 | 10 | -- | -- |
| 192.23 | 0.65 | 8.8 | -1.51 | 1.12 | -- | 0.691 | -- | -0.289 | 1.93 | -- | -- | -- | -- |
| 194.03 | 0.652 | 8.8 | -1.53 | 1.13 | -- | -- | -- | -0.294 | 2.03 | -- | -- | -- | -- |
| 175.05 | 0.616 | 8.79 | -1.51 | -- | -1.83 | -- | -- | -0.267 | -- | 93.13 | 11 | -- | -- |
| 197.76 | 0.655 | 8.79 | -- | 1.46 | -1.66 | -- | -- | -0.22 | 1.49 | 79.6 | 1126 | -- | -- |
| 270.09 | 0.768 | 8.79 | -1.49 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 256.09 | 0.749 | 8.76 | -- | 1.1 | -- | -- | -- | -0.123 | 2 | -- | -- | -- | -- |
| 234.14 | 0.713 | 8.75 | -- | -- | -1.77 | -- | -- | -0.108 | -- | 92.77 | 11 | -- | -- |
| 328.47 | 0.846 | 8.75 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 3 | 147.53 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 13 | 148.41 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 26 | 149.28 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 33 | 149.46 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 36 | 149.50 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 39 | 149.52 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 41 | 149.60 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 66 | 150.01 | humidity | 90.0 | 720 | < th | dose independent | rect. | 6 | 18 |
| 102 | 150.51 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 106 | 150.55 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 155 | 151.03 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 1 | NA |
| 368 | 152.58 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 403 | 152.83 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 428 | 152.98 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 472 | 153.20 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 529 | 153.44 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 566 | 153.57 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 602 | 153.68 | humidity | 50.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 611 | 153.70 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 694 | 153.98 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 731 | 154.12 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 757 | 154.21 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 19 |
| 790 | 154.31 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 808 | 154.33 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 893 | 154.39 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 899 | 154.42 | radiation | 10.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 924 | 154.47 | precipitation | 0.1 | 270 | > th | dose independent | sin | 9 | NA |