Os06g0109300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os06g0109300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.77 | 0.748 | 9.63 | -2.92 | 2.91 | -0.0398 | 1.21 | 5.97 | -0.278 | 6.86 | 25 | 10095 | 9.52 | 3.09 |
| 293.28 | 0.798 | 9.26 | -1.27 | 2.85 | -0.551 | 0.99 | -- | 0.269 | 6.84 | 15.21 | 23005 | 11.7 | 0.628 |
| 256.56 | 0.746 | 9.63 | -2.86 | 2.91 | -0.0546 | -- | 6.12 | -0.282 | 6.9 | 24.93 | 10150 | 9.87 | 2.75 |
| 278.94 | 0.778 | 9.32 | -2.06 | 2.85 | -1.54 | -- | -- | 0.0152 | 6.97 | 14.42 | 46570 | 3.83 | 14.1 |
| 687.79 | 1.22 | 9.7 | -2.75 | -- | 0.063 | -- | 6.28 | -0.189 | -- | 24.7 | 12368 | 9.88 | 2.8 |
| 314.76 | 0.832 | 9.25 | -0.991 | 2.89 | -- | 1.18 | -- | 0.413 | 6.88 | -- | -- | -- | -- |
| 318.32 | 0.836 | 9.25 | -0.97 | 2.89 | -- | -- | -- | 0.41 | 6.89 | -- | -- | -- | -- |
| 402.55 | 0.934 | 9.43 | -2.05 | -- | -2 | -- | -- | 0.264 | -- | 40.77 | 12292 | 10.6 | 3.12 |
| 340.26 | 0.859 | 9.2 | -- | 2.87 | 0.322 | -- | -- | 0.599 | 6.94 | 10.8 | 16402 | 4.52 | 14.2 |
| 756.01 | 1.28 | 9.31 | -0.908 | -- | -- | -- | -- | 0.464 | -- | -- | -- | -- | -- |
| 343.12 | 0.866 | 9.22 | -- | 2.88 | -- | -- | -- | 0.518 | 6.91 | -- | -- | -- | -- |
| 385.74 | 0.915 | 9.37 | -- | -- | -2.13 | -- | -- | 0.253 | -- | 41.05 | 13690 | 10.6 | 4.05 |
| 777.77 | 1.3 | 9.29 | -- | -- | -- | -- | -- | 0.565 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.05 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 2 | 250.22 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 5 | 250.42 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 6 | 250.44 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 9 | 250.89 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 15 | 251.46 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 68 | 253.67 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 105 | 255.06 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 107 | 255.12 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 125 | 255.45 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 129 | 255.50 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 163 | 255.93 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 175 | 256.08 | temperature | 25.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 187 | 256.22 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 196 | 256.30 | temperature | 25.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 202 | 256.36 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 219 | 256.47 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 252 | 256.76 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 299 | 257.11 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 343 | 257.50 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 346 | 257.53 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 473 | 258.31 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 495 | 258.45 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 601 | 259.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 687 | 259.62 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 717 | 259.75 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 760 | 259.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 761 | 259.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 6 |
| 765 | 259.92 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 781 | 259.99 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 862 | 260.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 908 | 260.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 986 | 260.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 990 | 260.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 991 | 260.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |