FiT-DB / Search/ Help/ Sample detail

Os06g0109200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0691) R2 : 0.522
β1 : -6.62 (0.384) R2dD : 0.884 R2D : -0.185
β2 : 1.87 (0.153) R2dC : 0.163 R2C : 0.144
β3 : 4.07 (0.313) R2dE : 0.561 R2E : -0.535
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.28 (0.18) R2dN8 : 0.122 R2N8 : -0.18
σ : 1.19
deviance : 654.77
__
_____
C
peak time of C : 22.7
E
wheather : temperature
threshold : 20.2
memory length : 21863
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
644.33 1.19 7.92 -6.34 1.69 3.21 -0.704 -9.06 -0.841 22.6 26.78 3114 -- --
659.06 1.2 7.84 -6.1 1.82 3.65 -1.07 -- -1.28 22.9 20.5 21868 -- --
630.53 1.17 7.95 -6.22 1.44 3.32 -- -8.76 -1.07 22.7 26.87 2438 -- --
654.77 1.19 7.84 -6.62 1.87 4.07 -- -- -1.28 22.7 20.2 21863 -- --
737.51 1.26 7.94 -6.35 -- 3.76 -- -8.74 -1.28 -- 26.6 2310 -- --
917.91 1.42 7.5 -2.73 1.96 -- -0.827 -- 0.245 22.7 -- -- -- --
920.74 1.42 7.5 -2.7 1.96 -- -- -- 0.247 22.8 -- -- -- --
812.97 1.33 7.67 -3.75 -- 3.2 -- -- -0.677 -- 25.89 2274 -- --
1003.63 1.48 7.56 -- 2.01 1.75 -- -- 0.0533 21.9 28.8 8287 -- --
1159.44 1.59 7.45 -2.66 -- -- -- -- 0.259 -- -- -- -- --
1112.93 1.56 7.43 -- 1.94 -- -- -- 0.548 22.7 -- -- -- --
1160.5 1.59 7.52 -- -- 2.25 -- -- -0.0467 -- 25.66 2255 -- --
1346.13 1.71 7.39 -- -- -- -- -- 0.554 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 634.17 wind 3.0 43200 < th dose independent rect. 8 2
2 636.29 wind 3.0 43200 > th dose independent rect. 8 2
3 637.39 wind 3.0 43200 < th dose dependent rect. 8 1
6 639.47 wind 7.0 43200 > th dose dependent rect. 9 5
7 639.61 wind 7.0 43200 > th dose dependent rect. 8 7
10 640.77 wind 3.0 43200 > th dose independent rect. 8 5
12 641.15 wind 9.0 43200 < th dose independent rect. 8 7
14 641.36 wind 7.0 43200 > th dose dependent rect. 5 10
15 641.57 wind 9.0 43200 < th dose independent rect. 19 20
19 642.50 wind 3.0 43200 > th dose dependent rect. 5 10
20 642.81 humidity 90.0 43200 > th dose independent rect. 9 1
26 643.73 wind 9.0 43200 > th dose independent rect. 19 20
27 643.77 wind 1.0 43200 > th dose dependent rect. 8 5
31 644.20 wind 9.0 43200 < th dose independent rect. 3 12
33 644.33 wind 7.0 43200 > th dose dependent rect. 24 15
37 644.65 wind 9.0 43200 > th dose independent rect. 8 7
41 644.84 wind 9.0 43200 < th dose independent rect. 24 15
47 645.51 wind 9.0 43200 < th dose dependent rect. 8 5
55 646.43 radiation 20.0 4320 < th dose dependent rect. 18 9
61 646.64 wind 7.0 43200 > th dose independent rect. 5 9
62 646.78 radiation 1.0 4320 < th dose dependent rect. 18 11
67 647.25 humidity 90.0 43200 < th dose independent rect. 9 2
70 647.38 wind 9.0 43200 < th dose dependent rect. 6 7
73 647.53 radiation 1.0 43200 > th dose independent rect. 18 1
109 648.55 radiation 20.0 4320 < th dose dependent rect. 18 1
118 648.87 humidity 80.0 43200 < th dose dependent rect. 22 1
124 649.18 radiation 1.0 14400 < th dose dependent rect. 1 4
128 649.25 radiation 1.0 4320 < th dose dependent rect. 18 5
133 649.48 temperature 20.0 1440 > th dose dependent rect. 6 3
137 649.51 radiation 1.0 4320 < th dose dependent rect. 18 7
171 650.45 wind 7.0 43200 > th dose dependent rect. 20 19
175 650.55 radiation 30.0 14400 > th dose independent rect. 16 16
180 650.72 wind 9.0 43200 > th dose independent rect. 24 15
181 650.74 wind 9.0 43200 > th dose independent rect. 2 13
194 650.78 wind 1.0 43200 > th dose dependent rect. 9 1
199 650.88 wind 7.0 43200 > th dose independent rect. 10 2
216 651.45 wind 9.0 43200 < th dose dependent rect. 11 1
232 652.06 humidity 80.0 43200 > th dose dependent rect. 10 1
239 652.26 wind 1.0 43200 > th dose dependent rect. 11 1
241 652.28 wind 3.0 43200 > th dose dependent sin 3 NA
258 652.67 wind 7.0 43200 < th dose independent rect. 10 2
308 654.06 humidity 90.0 43200 > th dose independent rect. 2 17
313 654.20 wind 9.0 43200 < th dose dependent rect. 3 12
321 654.38 wind 3.0 43200 > th dose independent rect. 3 11
376 655.68 humidity 90.0 43200 > th dose independent rect. 2 12
377 655.69 radiation 1.0 14400 < th dose dependent rect. 21 8
378 655.72 humidity 90.0 43200 > th dose independent rect. 2 21
397 656.06 humidity 90.0 43200 > th dose dependent rect. 3 16
409 656.26 humidity 90.0 14400 > th dose dependent rect. 14 17
414 656.37 humidity 80.0 43200 < th dose dependent rect. 22 10
416 656.39 wind 3.0 43200 < th dose independent rect. 3 9
419 656.42 atmosphere 1005.0 43200 > th dose independent rect. 18 1
432 656.49 humidity 90.0 14400 > th dose dependent rect. 21 6
456 656.81 wind 7.0 43200 > th dose independent sin 4 NA
479 657.28 radiation 1.0 14400 > th dose independent rect. 5 1
487 657.52 radiation 1.0 14400 < th dose independent rect. 5 1
491 657.63 humidity 90.0 43200 > th dose independent sin 3 NA
518 657.97 humidity 90.0 43200 > th dose independent rect. 3 8
537 658.22 wind 7.0 43200 < th dose independent sin 4 NA
550 658.34 atmosphere 1005.0 43200 < th dose independent rect. 18 1
554 658.41 wind 3.0 43200 < th dose independent rect. 3 7
564 658.53 humidity 90.0 43200 < th dose independent rect. 17 2
575 658.60 humidity 90.0 43200 > th dose dependent rect. 4 20
587 658.73 humidity 90.0 43200 > th dose independent rect. 22 1
616 659.07 humidity 90.0 43200 > th dose dependent rect. 4 6
629 659.26 temperature 25.0 4320 < th dose independent rect. 5 9
641 659.40 humidity 90.0 43200 > th dose dependent sin 2 NA
642 659.45 precipitation 0.1 43200 > th dose dependent rect. 2 4
648 659.51 humidity 90.0 14400 > th dose dependent sin 13 NA
679 659.83 radiation 1.0 14400 < th dose independent rect. 18 11
694 659.94 temperature 25.0 4320 > th dose dependent rect. 16 1
759 660.61 temperature 25.0 4320 > th dose independent rect. 5 9
770 660.73 radiation 1.0 14400 < th dose independent rect. 18 9
778 660.83 radiation 30.0 14400 > th dose independent rect. 7 1
798 660.90 radiation 1.0 14400 < th dose independent rect. 18 1
800 660.90 humidity 90.0 43200 > th dose dependent rect. 5 3
801 660.90 wind 3.0 43200 > th dose dependent rect. 20 20
818 661.03 radiation 1.0 14400 < th dose independent rect. 18 5
840 661.25 humidity 90.0 43200 > th dose independent rect. 7 17
845 661.31 humidity 90.0 43200 > th dose independent rect. 18 1
856 661.39 humidity 90.0 43200 > th dose independent rect. 5 23
866 661.50 humidity 90.0 43200 > th dose independent rect. 22 22
873 661.57 temperature 20.0 14400 > th dose independent rect. 22 1
892 661.73 temperature 25.0 14400 < th dose independent rect. 11 1
933 662.05 temperature 20.0 43200 > th dose independent rect. 19 2
957 662.29 temperature 20.0 14400 < th dose independent rect. 20 5
962 662.31 humidity 90.0 43200 > th dose independent rect. 15 23
973 662.38 precipitation 0.1 43200 < th dose independent rect. 3 2
974 662.38 precipitation 0.1 43200 < th dose dependent rect. 3 2
985 662.48 wind 1.0 43200 < th dose dependent rect. 1 1
996 662.56 temperature 20.0 14400 > th dose independent rect. 21 3