Os06g0107700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor (EC 1.18.1.2) (FNR).
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Os06g0107700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor (EC 1.18.1.2) (FNR).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.99 | 0.339 | 14.4 | -0.369 | 0.603 | -0.417 | -0.268 | -0.534 | -0.651 | 20.1 | 49.85 | 1425 | -- | -- |
| 52.33 | 0.337 | 14.4 | -0.432 | 0.542 | -0.512 | -0.316 | -- | -0.656 | 19.5 | 51.1 | 1159 | -- | -- |
| 52.2 | 0.336 | 14.4 | -0.364 | 0.604 | -0.412 | -- | -0.521 | -0.652 | 20.2 | 49 | 1445 | -- | -- |
| 52.58 | 0.338 | 14.4 | -0.424 | 0.576 | -0.515 | -- | -- | -0.663 | 19.6 | 49.07 | 1191 | -- | -- |
| 56.21 | 0.349 | 14.4 | -0.442 | -- | -0.933 | -- | 0.122 | -0.67 | -- | 52.91 | 715 | -- | -- |
| 57.77 | 0.356 | 14.4 | -0.406 | 0.597 | -- | -0.244 | -- | -0.643 | 20.3 | -- | -- | -- | -- |
| 57.96 | 0.357 | 14.4 | -0.399 | 0.597 | -- | -- | -- | -0.644 | 20.3 | -- | -- | -- | -- |
| 55.46 | 0.347 | 14.4 | -0.417 | -- | -0.879 | -- | -- | -0.71 | -- | 66.07 | 709 | -- | -- |
| 57.17 | 0.352 | 14.4 | -- | 0.573 | -0.567 | -- | -- | -0.65 | 19.8 | 48.89 | 2634 | -- | -- |
| 77.71 | 0.412 | 14.4 | -0.403 | -- | -- | -- | -- | -0.65 | -- | -- | -- | -- | -- |
| 62.16 | 0.369 | 14.4 | -- | 0.599 | -- | -- | -- | -0.599 | 20.2 | -- | -- | -- | -- |
| 59.88 | 0.36 | 14.4 | -- | -- | -0.879 | -- | -- | -0.665 | -- | 67.13 | 706 | -- | -- |
| 82 | 0.423 | 14.4 | -- | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.72 | humidity | 70.0 | 30 | > th | dose independent | rect. | 13 | 11 |
| 5 | 49.55 | humidity | 70.0 | 30 | < th | dose independent | rect. | 16 | 4 |
| 17 | 49.74 | humidity | 70.0 | 30 | > th | dose independent | sin | 13 | NA |
| 19 | 49.83 | humidity | 70.0 | 10 | > th | dose independent | rect. | 17 | 7 |
| 25 | 50.21 | humidity | 70.0 | 30 | < th | dose independent | sin | 13 | NA |
| 29 | 50.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 23 |
| 33 | 50.41 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 35 | 50.47 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 40 | 50.53 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 47 | 50.57 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 49 | 50.60 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 50 | 50.61 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 80 | 50.73 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 81 | 50.73 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 89 | 50.78 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 90 | 50.78 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 91 | 50.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 94 | 50.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 98 | 50.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 100 | 50.81 | humidity | 50.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 102 | 50.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 106 | 50.82 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 6 | 4 |
| 115 | 50.84 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 116 | 50.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 119 | 50.86 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 122 | 50.86 | humidity | 50.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 127 | 50.89 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 128 | 50.89 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 133 | 50.89 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 17 | 7 |
| 142 | 50.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 158 | 50.96 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 161 | 50.96 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 15 | 9 |
| 164 | 50.96 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 172 | 50.98 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 217 | 51.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 218 | 51.04 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 223 | 51.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 226 | 51.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 228 | 51.07 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 232 | 51.08 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 238 | 51.08 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 269 | 51.10 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 311 | 51.12 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 340 | 51.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 384 | 51.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 386 | 51.17 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 18 |
| 389 | 51.18 | wind | 3.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 391 | 51.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 392 | 51.18 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 397 | 51.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 404 | 51.19 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 444 | 51.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 448 | 51.23 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 449 | 51.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 476 | 51.25 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 477 | 51.25 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 490 | 51.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 494 | 51.27 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 524 | 51.29 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 533 | 51.30 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 544 | 51.31 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 575 | 51.34 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 584 | 51.35 | wind | 3.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 590 | 51.35 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 591 | 51.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 602 | 51.36 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 603 | 51.36 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 606 | 51.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 611 | 51.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 613 | 51.37 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 5 |
| 631 | 51.38 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 639 | 51.39 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 644 | 51.39 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 656 | 51.40 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 660 | 51.40 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 10 | 6 |
| 663 | 51.40 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 16 | 17 |
| 666 | 51.41 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 668 | 51.41 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 688 | 51.42 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 701 | 51.43 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 714 | 51.44 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 720 | 51.44 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 727 | 51.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 734 | 51.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 752 | 51.46 | humidity | 80.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 781 | 51.48 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 792 | 51.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 807 | 51.49 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 848 | 51.51 | humidity | 70.0 | 30 | > th | dose independent | rect. | 10 | 14 |
| 887 | 51.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 900 | 51.53 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 904 | 51.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 11 |
| 907 | 51.53 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 932 | 51.54 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 12 |
| 944 | 51.55 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 952 | 51.55 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 966 | 51.56 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 976 | 51.56 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 980 | 51.56 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 10 |