FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0107600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.71 (0.0374) R2 : 0.517
β1 : -1.38 (0.175) R2dD : 0.122 R2D : -0.0237
β2 : 1.81 (0.093) R2dC : 0.405 R2C : 0.414
β3 : -0.603 (0.17) R2dE : 0.0169 R2E : 0.00102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.1 (0.63) R2dD*E : 0.134 R2D*E : -0.0527
γ1 : 0.104 (0.0848) R2dN8 : 0.00253 R2N8 : 0.00919
σ : 0.671
deviance : 207.34
__
_____
C
peak time of C : 7.22
E
wheather : radiation
threshold : 1.51
memory length : 6043
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.02 0.673 4.71 -1.35 1.79 -0.606 -0.968 -5.13 0.103 7.24 1.509 6078 -- --
223.11 0.696 4.64 -0.719 1.75 -0.974 -0.973 -- 0.301 7.36 9.681 3344 -- --
207.34 0.671 4.71 -1.38 1.81 -0.603 -- -5.1 0.104 7.22 1.51 6043 -- --
225.26 0.699 4.64 -0.749 1.73 -0.969 -- -- 0.3 7.25 9.698 3342 -- --
335.98 0.854 4.8 -1.45 -- -1.2 -- -4.79 0.385 -- 1.34 4975 -- --
235.95 0.72 4.66 -0.509 1.84 -- -0.853 -- 0.207 7.05 -- -- -- --
237.76 0.722 4.66 -0.527 1.84 -- -- -- 0.208 6.97 -- -- -- --
302.72 0.81 4.74 -0.581 -- -1.48 -- -- 0.415 -- 2.336 3766 -- --
231.01 0.708 4.63 -- 1.7 -0.948 -- -- 0.387 7.18 12.61 3350 -- --
416.04 0.953 4.7 -0.489 -- -- -- -- 0.242 -- -- -- -- --
245.08 0.732 4.64 -- 1.84 -- -- -- 0.267 6.99 -- -- -- --
283.74 0.785 4.42 -- -- -2.44 -- -- 0.753 -- 1.561 2268 -- --
422.35 0.959 4.69 -- -- -- -- -- 0.297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.57 temperature 30 14400 < th dose independent rect. 13 2
2 201.67 temperature 30 14400 > th dose independent rect. 13 2
6 201.74 temperature 25 14400 > th dose dependent rect. 7 7
10 201.77 temperature 25 14400 > th dose dependent rect. 13 1
15 201.79 temperature 25 14400 > th dose dependent rect. 10 4
31 201.92 temperature 30 14400 > th dose independent rect. 11 5
69 202.13 temperature 25 14400 > th dose dependent sin 3 NA
174 202.67 temperature 25 14400 > th dose independent rect. 6 3
221 202.86 temperature 25 14400 < th dose independent rect. 6 3
284 202.97 temperature 25 14400 > th dose dependent no NA NA
297 203.00 temperature 30 14400 < th dose independent rect. 11 1
307 203.03 temperature 30 14400 > th dose independent rect. 11 1
336 203.15 temperature 30 14400 < th dose independent rect. 24 16
352 203.18 temperature 30 14400 < th dose independent rect. 3 13
360 203.19 temperature 30 14400 < th dose independent rect. 11 17
368 203.20 temperature 30 14400 < th dose independent rect. 11 14
431 203.34 temperature 25 14400 > th dose independent rect. 3 8
461 203.39 temperature 25 14400 < th dose independent rect. 3 8
613 203.75 temperature 30 14400 < th dose independent sin 21 NA
657 203.88 temperature 30 14400 > th dose independent sin 22 NA
760 204.15 temperature 30 14400 < th dose independent no NA NA
778 204.15 temperature 30 14400 < th dose independent rect. 2 23
797 204.16 temperature 30 14400 < th dose independent rect. 4 21
884 204.25 temperature 25 14400 > th dose independent sin 6 NA
892 204.29 temperature 30 14400 > th dose independent no NA NA