Os06g0107200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0107200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.53	(0.0372)	R²	:	0.746
β₁	:	-0.731	(0.138)	R²_dD	:	0.0167	R²_D	:	0.00639
β₂	:	3.04	(0.0887)	R²_dC	:	0.665	R²_C	:	0.589
β₃	:	-2.3	(0.149)	R²_dE	:	0.143	R²_E	:	0.0542
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.157	(0.0805)	R²_dN8	:	0.00302	R²_N8	:	0.00823
σ	:	0.692
deviance	:	220.91
__

_____

C
peak time of C	:	12.7
E
wheather	:	temperature
threshold	:	29.94
memory length	:	13
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	1.97
open length of G	:	19.2

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
219.11	0.695	5.53	-0.738	3.04	-2.28	0.68	-0.125	0.161	12.7	29.99	12	1.98	19.1
219.14	0.689	5.53	-0.744	3.04	-2.28	0.661	--	0.161	12.7	30.03	12	1.98	19
220.78	0.692	5.53	-0.754	3.05	-2.3	--	0.249	0.15	12.7	30.02	13	1.98	19
220.91	0.692	5.53	-0.731	3.04	-2.3	--	--	0.157	12.7	29.94	13	1.97	19.2
457.67	0.996	5.68	-1.18	--	-4.38	--	-1.54	-0.396	--	30.1	2	5.73	24
315.73	0.833	5.49	-0.389	2.94	--	1.19	--	0.399	13.4	--	--	--	--
321.51	0.84	5.49	-0.348	2.94	--	--	--	0.406	13.4	--	--	--	--
458.38	1	5.71	-1.44	--	-4.4	--	--	-0.475	--	30.1	2	14.6	24
234.47	0.713	5.51	--	3.05	-2.19	--	--	0.247	12.7	30.11	14	1.98	19.2
852.16	1.36	5.53	-0.464	--	--	--	--	0.344	--	--	--	--	--
324.7	0.843	5.48	--	2.94	--	--	--	0.445	13.4	--	--	--	--
510.07	1.06	5.66	--	--	-4.01	--	--	-0.252	--	30.1	2	14.6	24
857.84	1.37	5.52	--	--	--	--	--	0.396	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	219.71	temperature	30	10	< th	dose dependent	rect.	2	19
10	224.80	temperature	10	270	> th	dose dependent	rect.	6	18
14	226.36	temperature	15	10	> th	dose dependent	rect.	6	20
15	226.61	temperature	15	90	> th	dose dependent	rect.	6	20
23	227.96	temperature	30	90	< th	dose dependent	rect.	1	22
55	233.43	temperature	30	10	< th	dose dependent	rect.	24	21
58	234.00	temperature	30	10	< th	dose dependent	rect.	24	23
96	236.83	temperature	30	10	< th	dose dependent	sin	23	NA
189	242.30	temperature	30	10	< th	dose dependent	rect.	11	10
195	242.63	temperature	15	10	> th	dose dependent	sin	0	NA
214	243.70	temperature	30	90	< th	dose dependent	rect.	11	10
220	243.96	temperature	30	90	< th	dose dependent	rect.	11	8
240	244.76	temperature	25	90	< th	dose independent	rect.	2	17
268	245.92	temperature	25	90	< th	dose independent	rect.	2	19
297	247.30	temperature	15	10	> th	dose dependent	rect.	3	23
346	248.92	temperature	30	10	< th	dose dependent	rect.	2	12
377	249.86	temperature	30	10	< th	dose dependent	rect.	11	23
429	251.33	temperature	30	10	< th	dose dependent	no	NA	NA
436	251.58	temperature	30	10	< th	dose dependent	rect.	15	23
443	251.80	temperature	30	10	< th	dose dependent	rect.	13	23
473	252.44	temperature	20	10	> th	dose dependent	rect.	21	23
476	252.55	temperature	30	10	< th	dose dependent	rect.	17	23
503	253.22	temperature	10	270	> th	dose dependent	rect.	5	10
506	253.25	temperature	10	10	> th	dose dependent	no	NA	NA
565	254.72	temperature	10	270	> th	dose dependent	rect.	17	22
577	255.09	temperature	30	10	< th	dose dependent	rect.	7	23
591	255.45	temperature	25	90	> th	dose independent	sin	0	NA
600	255.67	temperature	30	10	< th	dose dependent	rect.	19	23
617	255.94	temperature	20	10	> th	dose dependent	rect.	23	23
626	256.16	temperature	25	90	< th	dose independent	rect.	11	8
649	256.61	temperature	30	10	< th	dose dependent	rect.	21	23
678	256.99	temperature	25	90	< th	dose independent	sin	0	NA
775	258.15	temperature	20	10	> th	dose dependent	rect.	6	12
802	258.45	temperature	15	720	> th	dose dependent	rect.	3	13
820	258.65	temperature	20	10	> th	dose dependent	rect.	21	19
946	259.80	temperature	20	10	> th	dose dependent	rect.	17	23
988	260.17	temperature	25	90	< th	dose independent	rect.	11	10