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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0106500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.05 (0.027) R2 : 0.698
β1 : 2.05 (0.098) R2dD : 0.311 R2D : 0.382
β2 : 1.11 (0.0741) R2dC : 0.205 R2C : -0.0738
β3 : 1.75 (0.0871) R2dE : 0.403 R2E : 0.166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0835 (0.0597) R2dN8 : 0.00195 R2N8 : -0.00438
σ : 0.493
deviance : 112.02
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_____
C
peak time of C : 22.4
E
wheather : temperature
threshold : 19.42
memory length : 835
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.05
open length of G : 4.68

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.97 0.497 5.04 2.14 1.15 1.8 -0.111 0.486 -0.0459 22.6 19.18 814 3.17 4.95
111.78 0.492 5.05 2.03 1.12 1.77 -0.231 -- -0.0838 22.4 19.36 835 3.05 4.69
111.9 0.493 5.04 2.15 1.14 1.78 -- 0.517 -0.0514 22.6 19.31 821 3.07 4.97
112.02 0.493 5.05 2.05 1.11 1.75 -- -- -0.0835 22.4 19.42 835 3.05 4.68
138.47 0.548 5.01 2.34 -- 1.42 -- 0.752 -0.0229 -- 21.71 1115 2.87 5.58
196.78 0.658 4.95 2.41 0.647 -- -0.234 -- 0.331 18.8 -- -- -- --
196.92 0.657 4.95 2.42 0.647 -- -- -- 0.331 18.8 -- -- -- --
136.61 0.544 5.03 1.97 -- 1.6 -- -- -0.121 -- 21.66 1067 1.29 7.92
149.68 0.57 5.06 -- 0.439 2.11 -- -- -0.543 21.1 15.5 41194 3.53 3.63
218.79 0.691 4.94 2.4 -- -- -- -- 0.318 -- -- -- -- --
350.93 0.876 5.01 -- 0.619 -- -- -- 0.0617 19 -- -- -- --
160.31 0.59 5.15 -- -- 2.21 -- -- -0.569 -- 14.98 41379 3.62 3.73
371.07 0.899 5 -- -- -- -- -- 0.0517 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.25 temperature 20 720 > th dose dependent rect. 3 6
2 117.51 temperature 20 720 > th dose dependent sin 6 NA
6 119.34 temperature 10 270 > th dose dependent rect. 3 14
7 119.38 temperature 10 720 > th dose dependent rect. 21 18
8 119.55 temperature 20 720 > th dose dependent rect. 22 16
54 122.37 temperature 30 720 < th dose dependent rect. 23 14
59 122.62 temperature 10 720 > th dose dependent rect. 3 8
93 123.51 temperature 30 720 < th dose dependent sin 5 NA
178 125.54 temperature 20 4320 > th dose dependent rect. 7 1
179 125.56 temperature 20 4320 > th dose dependent rect. 3 7
180 125.57 temperature 20 4320 > th dose dependent rect. 2 9
183 125.63 temperature 20 4320 > th dose dependent rect. 6 3
225 126.23 temperature 10 4320 > th dose dependent rect. 6 3
231 126.29 temperature 10 4320 > th dose dependent rect. 7 1
242 126.36 temperature 30 4320 < th dose dependent rect. 7 1
246 126.37 temperature 30 4320 < th dose dependent rect. 3 9
255 126.43 temperature 30 4320 < th dose dependent rect. 6 3
262 126.46 temperature 30 4320 < th dose dependent rect. 4 7
360 127.07 temperature 20 4320 > th dose dependent sin 6 NA
538 128.00 temperature 30 4320 < th dose dependent sin 5 NA
862 129.15 temperature 20 4320 > th dose dependent rect. 3 1