Os06g0105700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os06g0105700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 628.62 | 1.18 | 5.78 | -4.14 | 1.06 | -1.15 | 0.146 | -4.82 | -1.42 | 5.19 | 1004 | 4384 | -- | -- |
| 654.57 | 1.19 | 5.75 | -3.97 | 1.06 | -1.45 | -0.0107 | -- | -1.47 | 5.27 | 1004 | 4359 | -- | -- |
| 628.66 | 1.17 | 5.78 | -4.14 | 1.06 | -1.16 | -- | -4.81 | -1.42 | 5.24 | 1004 | 4383 | -- | -- |
| 654.56 | 1.19 | 5.75 | -3.98 | 1.07 | -1.45 | -- | -- | -1.47 | 5.29 | 1004 | 4359 | -- | -- |
| 687.02 | 1.22 | 5.8 | -4.11 | -- | -1.14 | -- | -4.9 | -1.39 | -- | 1004 | 4426 | -- | -- |
| 707.02 | 1.25 | 5.7 | -4.12 | 1.05 | -- | 0.0164 | -- | -1.24 | 5.26 | -- | -- | -- | -- |
| 707.02 | 1.25 | 5.7 | -4.12 | 1.05 | -- | -- | -- | -1.24 | 5.26 | -- | -- | -- | -- |
| 713.71 | 1.24 | 5.76 | -3.95 | -- | -1.43 | -- | -- | -1.44 | -- | 1004 | 4370 | -- | -- |
| 1030.93 | 1.5 | 5.63 | -- | 0.954 | -2.05 | -- | -- | -0.992 | 5.15 | 999.5 | 11874 | -- | -- |
| 764.81 | 1.29 | 5.71 | -4.09 | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
| 1154.79 | 1.59 | 5.6 | -- | 0.982 | -- | -- | -- | -0.778 | 5.42 | -- | -- | -- | -- |
| 1076.61 | 1.53 | 5.67 | -- | -- | -2.28 | -- | -- | -1.03 | -- | 999.7 | 11835 | -- | -- |
| 1205.07 | 1.62 | 5.61 | -- | -- | -- | -- | -- | -0.758 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 616.57 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 620.46 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 16 | 620.78 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 17 | 620.83 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 19 | 621.44 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 21 | 622.05 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 26 | 622.64 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 40 | 622.76 | wind | 5 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 43 | 622.98 | wind | 5 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 74 | 627.78 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 80 | 628.00 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 84 | 628.16 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 86 | 628.22 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 98 | 628.67 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 99 | 628.69 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 106 | 629.05 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 16 |
| 137 | 629.92 | radiation | 30 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 164 | 631.08 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 197 | 631.75 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 6 | NA |
| 208 | 631.99 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 15 |
| 217 | 632.21 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 239 | 632.34 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 4 | 16 |
| 253 | 632.61 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 6 | NA |
| 259 | 632.84 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 1 |
| 359 | 633.80 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 373 | 633.89 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 16 |
| 375 | 633.94 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 9 |
| 379 | 633.99 | wind | 5 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 414 | 634.65 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 416 | 634.67 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 438 | 634.93 | humidity | 60 | 720 | < th | dose independent | rect. | 17 | 16 |
| 484 | 635.58 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 9 |
| 528 | 636.22 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 554 | 636.61 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 568 | 636.94 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 569 | 636.98 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 589 | 637.16 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 2 | 7 |
| 603 | 637.33 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 24 | 3 |
| 608 | 637.42 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 15 | 21 |
| 612 | 637.45 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 14 | 22 |
| 641 | 637.78 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 24 | 3 |
| 669 | 638.01 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 673 | 638.08 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 24 | 22 |
| 679 | 638.12 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 6 |
| 741 | 638.65 | radiation | 30 | 90 | > th | dose independent | rect. | 12 | 23 |
| 818 | 639.11 | atmosphere | 1005 | 4320 | < th | dose independent | no | NA | NA |
| 845 | 639.27 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 7 | NA |
| 853 | 639.30 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 861 | 639.35 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 3 | 9 |
| 867 | 639.37 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 24 | 22 |