Os06g0104300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectinesterase-like protein.
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Os06g0104300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectinesterase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 302.22 | 0.817 | 4.66 | 0.456 | 0.514 | 0.45 | -0.209 | -1.66 | -0.556 | 23.7 | 90.8 | 78 | -- | -- |
| 312.45 | 0.823 | 4.64 | 0.26 | 0.52 | 0.534 | -0.889 | -- | -0.584 | 23.3 | 93 | 189 | -- | -- |
| 301.64 | 0.809 | 4.65 | 0.477 | 0.52 | 0.474 | -- | -1.85 | -0.542 | 23.9 | 91.24 | 89 | -- | -- |
| 309.59 | 0.819 | 4.66 | 0.318 | 0.772 | 0.908 | -- | -- | -0.556 | 23.6 | 92 | 684 | -- | -- |
| 316.55 | 0.829 | 4.63 | 0.458 | -- | 0.642 | -- | -1.73 | -0.495 | -- | 91 | 89 | -- | -- |
| 323.12 | 0.843 | 4.67 | 0.333 | 0.649 | -- | -0.78 | -- | -0.712 | 0.83 | -- | -- | -- | -- |
| 325.68 | 0.845 | 4.66 | 0.361 | 0.651 | -- | -- | -- | -0.708 | 0.916 | -- | -- | -- | -- |
| 331.06 | 0.847 | 4.62 | 0.309 | -- | 0.567 | -- | -- | -0.544 | -- | 92 | 89 | -- | -- |
| 310.73 | 0.821 | 4.63 | -- | 0.84 | 1.04 | -- | -- | -0.533 | 23.6 | 92.6 | 726 | -- | -- |
| 352.13 | 0.877 | 4.65 | 0.385 | -- | -- | -- | -- | -0.696 | -- | -- | -- | -- | -- |
| 329.11 | 0.849 | 4.67 | -- | 0.657 | -- | -- | -- | -0.749 | 0.939 | -- | -- | -- | -- |
| 333.65 | 0.851 | 4.62 | -- | -- | 0.569 | -- | -- | -0.545 | -- | 92 | 89 | -- | -- |
| 356.04 | 0.881 | 4.66 | -- | -- | -- | -- | -- | -0.739 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 299.31 | humidity | 90.0 | 90 | > th | dose independent | sin | 7 | NA |
| 3 | 299.99 | humidity | 90.0 | 90 | > th | dose independent | rect. | 21 | 15 |
| 10 | 300.43 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 13 |
| 21 | 300.71 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 25 | 300.95 | humidity | 90.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 34 | 301.25 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 35 | 301.26 | humidity | 90.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 48 | 301.75 | humidity | 90.0 | 90 | > th | dose independent | rect. | 2 | 23 |
| 52 | 301.90 | humidity | 90.0 | 90 | > th | dose independent | rect. | 17 | 21 |
| 53 | 301.91 | humidity | 90.0 | 90 | > th | dose independent | rect. | 17 | 19 |
| 56 | 301.95 | humidity | 90.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 61 | 302.01 | humidity | 90.0 | 90 | > th | dose independent | rect. | 6 | 23 |
| 70 | 302.22 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 22 | 14 |
| 77 | 302.34 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 82 | 302.38 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 22 |
| 88 | 302.47 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 93 | 302.53 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 14 |
| 99 | 302.63 | humidity | 90.0 | 90 | > th | dose independent | no | NA | NA |
| 100 | 302.63 | humidity | 90.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 116 | 302.87 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 119 | 302.92 | humidity | 90.0 | 90 | > th | dose independent | rect. | 2 | 10 |
| 138 | 303.25 | humidity | 90.0 | 90 | > th | dose independent | rect. | 21 | 11 |
| 151 | 303.48 | humidity | 90.0 | 10 | < th | dose independent | rect. | 19 | 15 |
| 153 | 303.52 | humidity | 90.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 177 | 303.76 | humidity | 90.0 | 90 | < th | dose independent | sin | 8 | NA |
| 183 | 303.82 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 9 |
| 192 | 303.85 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 200 | 303.90 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 220 | 304.04 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 222 | 304.06 | humidity | 90.0 | 90 | > th | dose dependent | no | NA | NA |
| 224 | 304.06 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 258 | 304.52 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 2 | 12 |
| 259 | 304.53 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 2 | 10 |
| 261 | 304.54 | humidity | 90.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 300 | 304.77 | humidity | 90.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 312 | 304.82 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 325 | 304.88 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 351 | 305.00 | temperature | 25.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 362 | 305.05 | humidity | 90.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 366 | 305.07 | humidity | 90.0 | 90 | < th | dose independent | rect. | 18 | 23 |
| 367 | 305.08 | humidity | 90.0 | 720 | > th | dose independent | sin | 22 | NA |
| 375 | 305.11 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 22 | 10 |
| 385 | 305.14 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 1 | 17 |
| 388 | 305.17 | humidity | 90.0 | 720 | > th | dose independent | rect. | 6 | 16 |
| 404 | 305.23 | humidity | 90.0 | 720 | > th | dose dependent | no | NA | NA |
| 412 | 305.24 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 414 | 305.25 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 417 | 305.27 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 419 | 305.28 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 421 | 305.29 | humidity | 90.0 | 10 | < th | dose independent | sin | 7 | NA |
| 425 | 305.31 | humidity | 90.0 | 720 | > th | dose independent | rect. | 24 | 22 |
| 453 | 305.40 | humidity | 90.0 | 720 | > th | dose independent | rect. | 6 | 23 |
| 461 | 305.43 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 10 |
| 466 | 305.46 | humidity | 90.0 | 720 | > th | dose independent | rect. | 3 | 19 |
| 468 | 305.46 | humidity | 50.0 | 90 | > th | dose dependent | sin | 11 | NA |
| 470 | 305.48 | humidity | 90.0 | 10 | < th | dose independent | rect. | 19 | 20 |
| 498 | 305.61 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 20 |
| 510 | 305.65 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 22 |
| 524 | 305.72 | humidity | 90.0 | 720 | > th | dose independent | rect. | 6 | 19 |
| 543 | 305.79 | humidity | 90.0 | 10 | < th | dose independent | rect. | 13 | 23 |
| 548 | 305.80 | humidity | 90.0 | 90 | < th | dose independent | rect. | 18 | 21 |
| 559 | 305.85 | humidity | 90.0 | 10 | > th | dose independent | rect. | 3 | 9 |
| 577 | 305.90 | humidity | 90.0 | 720 | > th | dose independent | rect. | 3 | 22 |
| 614 | 306.08 | humidity | 90.0 | 10 | < th | dose independent | rect. | 11 | 23 |
| 628 | 306.12 | humidity | 90.0 | 10 | < th | dose independent | no | NA | NA |
| 631 | 306.13 | humidity | 90.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 648 | 306.19 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 693 | 306.35 | humidity | 90.0 | 90 | < th | dose independent | rect. | 16 | 23 |
| 696 | 306.37 | humidity | 90.0 | 720 | > th | dose independent | no | NA | NA |
| 712 | 306.43 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 726 | 306.47 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 732 | 306.49 | humidity | 90.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 741 | 306.51 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 745 | 306.51 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 749 | 306.52 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 763 | 306.56 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 765 | 306.56 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 18 |
| 767 | 306.57 | humidity | 90.0 | 90 | < th | dose independent | rect. | 21 | 12 |
| 782 | 306.60 | humidity | 90.0 | 90 | > th | dose independent | rect. | 2 | 6 |
| 787 | 306.61 | humidity | 90.0 | 10 | < th | dose independent | rect. | 16 | 23 |
| 816 | 306.66 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 822 | 306.67 | humidity | 90.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 826 | 306.68 | humidity | 90.0 | 90 | < th | dose independent | no | NA | NA |
| 836 | 306.68 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 837 | 306.69 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 8 |
| 839 | 306.69 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 1 | 17 |
| 844 | 306.70 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 868 | 306.73 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 872 | 306.73 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 896 | 306.79 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 916 | 306.82 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 921 | 306.83 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 22 | 7 |
| 925 | 306.84 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 959 | 306.92 | humidity | 90.0 | 720 | < th | dose independent | rect. | 4 | 20 |
| 960 | 306.92 | humidity | 90.0 | 10 | < th | dose independent | rect. | 13 | 21 |
| 979 | 306.98 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 980 | 306.99 | humidity | 90.0 | 720 | > th | dose independent | rect. | 16 | 23 |