Os06g0104200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OsNAC7 protein.
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Os06g0104200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to OsNAC7 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.58 | 0.307 | 3.31 | -0.147 | 0.153 | 25.8 | 0.0724 | -91.5 | -0.0506 | 7.69 | 80.04 | 90 | 24 | 2.97 |
| 53.63 | 0.344 | 3.25 | 0.093 | 0.179 | 2.38 | 0.0404 | -- | -0.0615 | 7.15 | 80.04 | 90 | 24 | 2.97 |
| 42.1 | 0.302 | 3.31 | -0.0925 | 0.16 | 25.8 | -- | -89.9 | -0.0566 | 6.02 | 79.82 | 93 | 24 | 2.62 |
| 42.65 | 0.304 | 3.24 | 0.111 | 0.138 | 4.59 | -- | -- | -0.0407 | 7.17 | 82.42 | 95 | 24 | 2.58 |
| 42.8 | 0.305 | 3.3 | -0.112 | -- | 25.5 | -- | -89.5 | -0.0463 | -- | 80 | 96 | 24 | 2.58 |
| 63.76 | 0.374 | 3.26 | 0.128 | 0.182 | -- | -0.0252 | -- | -0.0714 | 6.28 | -- | -- | -- | -- |
| 63.77 | 0.374 | 3.26 | 0.127 | 0.181 | -- | -- | -- | -0.0713 | 6.3 | -- | -- | -- | -- |
| 43.96 | 0.309 | 3.26 | 0.101 | -- | 4.64 | -- | -- | -0.0529 | -- | 82.52 | 96 | 24 | 2.6 |
| 42.83 | 0.305 | 3.25 | -- | 0.157 | 4.56 | -- | -- | -0.0646 | 7.3 | 82.31 | 97 | 24 | 2.53 |
| 65.47 | 0.378 | 3.26 | 0.132 | -- | -- | -- | -- | -0.0673 | -- | -- | -- | -- | -- |
| 64.19 | 0.375 | 3.26 | -- | 0.183 | -- | -- | -- | -0.0854 | 6.27 | -- | -- | -- | -- |
| 44.2 | 0.31 | 3.26 | -- | -- | 4.6 | -- | -- | -0.0617 | -- | 82.32 | 99 | 24 | 2.58 |
| 65.93 | 0.379 | 3.26 | -- | -- | -- | -- | -- | -0.082 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.85 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 2 | 42.86 | humidity | 80.0 | 30 | < th | dose independent | rect. | 24 | 2 |
| 64 | 50.57 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 152 | 54.59 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 2 |
| 160 | 54.75 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 185 | 55.43 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 1 | 2 |
| 187 | 55.51 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 335 | 57.53 | wind | 5.0 | 270 | > th | dose independent | rect. | 22 | 1 |
| 377 | 58.03 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 479 | 58.81 | humidity | 80.0 | 90 | < th | dose independent | sin | 10 | NA |
| 483 | 58.83 | wind | 5.0 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 512 | 58.98 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 518 | 59.03 | wind | 3.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 547 | 59.17 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 586 | 59.39 | humidity | 80.0 | 10 | < th | dose independent | sin | 9 | NA |
| 621 | 59.56 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 22 |
| 627 | 59.60 | humidity | 80.0 | 90 | > th | dose independent | sin | 9 | NA |
| 682 | 59.82 | humidity | 80.0 | 90 | > th | dose independent | rect. | 21 | 13 |
| 703 | 59.89 | wind | 1.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 705 | 59.89 | wind | 5.0 | 720 | < th | dose independent | rect. | 16 | 14 |
| 707 | 59.91 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 732 | 59.97 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 734 | 59.98 | wind | 7.0 | 720 | < th | dose independent | sin | 12 | NA |
| 738 | 59.99 | wind | 5.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 759 | 60.04 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 762 | 60.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 790 | 60.12 | wind | 5.0 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 791 | 60.13 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 802 | 60.13 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 833 | 60.18 | humidity | 80.0 | 270 | > th | dose independent | rect. | 20 | 10 |
| 846 | 60.19 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 891 | 60.25 | wind | 5.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 898 | 60.26 | wind | 5.0 | 30 | < th | dose independent | rect. | 1 | 2 |
| 901 | 60.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 9 |
| 907 | 60.26 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 9 |
| 952 | 60.33 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 958 | 60.33 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 995 | 60.37 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 2 |
| 996 | 60.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 4 |