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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0104100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Terpenoid synthase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.52 (0.0329) R2 : 0.246
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.912 (0.0849) R2dC : 0.191 R2C : 0.182
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.381 (0.0694) R2dN8 : 0.0643 R2N8 : 0.0548
σ : 0.622
deviance : 176.62
__
_____
C
peak time of C : 16.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.55 0.571 5.54 -0.447 0.789 0.967 1.82 2.27 -0.436 18.8 4.18 9 -- --
155.93 0.586 5.54 -0.391 0.789 0.708 1.69 -- -0.427 17.6 4.18 9 -- --
155.18 0.58 5.53 -0.452 0.766 0.84 -- 2.07 -0.396 18 9.475 8 -- --
162.54 0.594 5.54 -0.381 0.786 0.853 -- -- -0.433 18.4 3.121 15 -- --
187.23 0.637 5.52 -0.489 -- 0.88 -- 2.01 -0.443 -- 9.99 8 -- --
164.91 0.602 5.53 -0.399 0.895 -- 1.69 -- -0.433 16.4 -- -- -- --
172.72 0.615 5.53 -0.385 0.905 -- -- -- -0.424 16.4 -- -- -- --
184.96 0.633 5.53 -0.458 -- 0.967 -- -- -0.472 -- -0.6139 289 -- --
166.69 0.601 5.53 -- 0.802 0.829 -- -- -0.391 18.3 2.88 15 -- --
216.73 0.688 5.52 -0.42 -- -- -- -- -0.447 -- -- -- -- --
176.62 0.622 5.52 -- 0.912 -- -- -- -0.381 16.4 -- -- -- --
189.81 0.642 5.52 -- -- 0.943 -- -- -0.451 -- -3.808 289 -- --
221.39 0.695 5.51 -- -- -- -- -- -0.401 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.32 temperature 10.0 43200 > th dose independent rect. 9 7
3 140.71 temperature 15.0 1440 > th dose independent rect. 9 7
5 141.88 atmosphere 1015.0 1440 < th dose independent rect. 3 6
6 142.04 temperature 15.0 90 > th dose independent rect. 15 17
7 142.48 radiation 30.0 10 < th dose independent rect. 4 15
12 142.76 temperature 10.0 90 > th dose dependent rect. 8 7
14 142.81 temperature 10.0 90 > th dose dependent rect. 14 18
15 142.86 atmosphere 1010.0 90 < th dose independent rect. 14 18
22 142.97 precipitation 0.1 90 < th dose independent rect. 8 7
23 142.97 precipitation 0.1 90 < th dose dependent rect. 8 7
24 143.08 temperature 10.0 10 > th dose dependent rect. 15 17
25 143.09 temperature 10.0 90 > th dose independent rect. 8 7
26 143.09 atmosphere 1015.0 90 < th dose independent rect. 8 7
30 143.26 radiation 1.0 10 > th dose dependent rect. 8 7
31 143.27 radiation 1.0 90 > th dose independent rect. 8 7
35 143.33 wind 9.0 90 < th dose independent rect. 8 7
36 143.37 atmosphere 995.0 90 > th dose independent rect. 8 7
38 143.42 radiation 40.0 90 < th dose independent rect. 15 17
50 143.61 radiation 40.0 30 < th dose dependent rect. 4 15
54 143.69 radiation 1.0 90 > th dose dependent rect. 8 6
59 143.76 radiation 30.0 10 < th dose independent rect. 2 17
61 143.78 wind 9.0 90 < th dose independent rect. 15 17
67 143.80 temperature 10.0 1440 > th dose independent rect. 16 17
78 143.83 wind 1.0 90 > th dose independent rect. 8 7
82 143.84 radiation 40.0 270 < th dose dependent rect. 1 16
99 143.98 radiation 20.0 270 < th dose dependent rect. 1 8
114 144.25 radiation 40.0 270 < th dose dependent sin 8 NA
125 144.36 temperature 15.0 270 > th dose independent rect. 2 16
140 144.51 wind 7.0 270 < th dose independent rect. 6 8
142 144.51 humidity 50.0 270 > th dose dependent rect. 18 7
144 144.53 temperature 15.0 270 > th dose independent rect. 10 23
178 144.62 precipitation 0.1 270 < th dose independent rect. 6 7
181 144.62 precipitation 0.1 270 < th dose dependent rect. 6 7
184 144.63 precipitation 0.1 30 < th dose independent rect. 8 18
185 144.63 precipitation 0.1 30 < th dose dependent rect. 8 18
186 144.63 wind 9.0 270 < th dose dependent rect. 6 19
188 144.64 temperature 10.0 270 > th dose independent rect. 6 7
189 144.64 atmosphere 995.0 270 > th dose independent rect. 6 7
190 144.64 atmosphere 1015.0 270 < th dose independent rect. 6 7
197 144.68 wind 1.0 270 > th dose independent rect. 13 17
198 144.69 temperature 10.0 30 > th dose dependent rect. 2 6
200 144.71 temperature 10.0 270 > th dose dependent rect. 6 7
206 144.72 temperature 20.0 270 > th dose independent rect. 11 8
207 144.72 atmosphere 995.0 90 > th dose independent rect. 15 17
210 144.73 radiation 1.0 270 > th dose independent rect. 6 7
214 144.77 radiation 1.0 270 > th dose dependent sin 8 NA
215 144.78 wind 9.0 1440 < th dose independent rect. 3 6
216 144.78 temperature 10.0 1440 > th dose independent rect. 3 6
219 144.78 humidity 50.0 1440 > th dose independent rect. 3 6
221 144.78 atmosphere 995.0 1440 > th dose independent rect. 3 6
224 144.78 temperature 10.0 1440 > th dose independent rect. 9 18
232 144.83 wind 7.0 30 < th dose independent rect. 2 6
233 144.83 radiation 20.0 270 < th dose dependent rect. 1 12
243 144.88 precipitation 0.1 30 < th dose independent rect. 2 6
245 144.88 radiation 1.0 270 > th dose dependent rect. 9 1
246 144.88 precipitation 0.1 30 < th dose dependent rect. 2 6
248 144.89 temperature 10.0 30 > th dose independent rect. 2 6
250 144.89 temperature 30.0 30 < th dose independent rect. 2 6
251 144.89 humidity 50.0 30 > th dose independent rect. 2 6
253 144.89 atmosphere 995.0 30 > th dose independent rect. 2 6
254 144.89 atmosphere 1015.0 30 < th dose independent rect. 2 6
256 144.89 temperature 10.0 30 > th dose independent rect. 8 18
262 144.91 radiation 30.0 10 < th dose independent rect. 12 20
263 144.91 radiation 40.0 10 < th dose dependent sin 1 NA
266 144.93 radiation 40.0 90 < th dose dependent sin 3 NA
267 144.94 humidity 90.0 90 < th dose independent rect. 8 7
268 144.94 wind 9.0 30 < th dose independent rect. 8 18
271 144.95 radiation 10.0 270 < th dose independent rect. 1 7
275 144.96 wind 9.0 270 < th dose dependent rect. 6 7
297 145.06 radiation 1.0 10 > th dose dependent rect. 8 23
307 145.13 radiation 1.0 90 > th dose dependent sin 4 NA
315 145.17 wind 9.0 270 < th dose dependent rect. 7 17
350 145.32 atmosphere 1010.0 30 < th dose independent rect. 4 4
351 145.32 precipitation 0.1 90 < th dose independent rect. 15 17
353 145.32 precipitation 0.1 90 < th dose dependent rect. 15 17
370 145.38 humidity 50.0 270 > th dose independent rect. 6 7
381 145.41 radiation 1.0 270 > th dose dependent rect. 6 5
386 145.44 humidity 50.0 270 > th dose independent rect. 19 16
396 145.48 wind 7.0 270 < th dose independent rect. 6 19
404 145.50 radiation 40.0 30 < th dose independent rect. 2 6
405 145.50 atmosphere 995.0 30 > th dose independent rect. 8 18
432 145.56 temperature 20.0 270 > th dose independent rect. 6 19
447 145.57 atmosphere 1015.0 270 < th dose independent rect. 11 8
448 145.57 temperature 10.0 270 > th dose independent rect. 19 16
449 145.57 atmosphere 995.0 270 > th dose independent rect. 19 16
475 145.63 precipitation 0.1 30 < th dose independent rect. 8 20
477 145.63 precipitation 0.1 30 < th dose dependent rect. 8 20
478 145.64 precipitation 0.1 10 < th dose independent rect. 15 17
483 145.64 precipitation 0.1 10 < th dose dependent rect. 15 17
498 145.66 wind 9.0 270 < th dose dependent rect. 17 8
513 145.71 temperature 10.0 10 > th dose dependent rect. 24 8
526 145.75 wind 9.0 270 < th dose independent rect. 19 16
542 145.78 precipitation 0.1 270 < th dose independent rect. 19 16
546 145.78 precipitation 0.1 270 < th dose dependent rect. 19 16
602 145.92 humidity 50.0 90 > th dose independent rect. 8 6
609 145.96 wind 9.0 270 < th dose independent rect. 5 23
612 145.98 wind 9.0 30 < th dose independent rect. 4 4
613 145.98 temperature 10.0 30 > th dose independent rect. 4 4
615 145.98 temperature 30.0 30 < th dose independent rect. 4 4
616 145.98 humidity 50.0 30 > th dose independent rect. 4 4
618 145.98 atmosphere 995.0 30 > th dose independent rect. 4 4
620 145.98 temperature 10.0 30 > th dose independent rect. 8 20
626 146.00 wind 7.0 270 < th dose independent rect. 17 9
650 146.02 wind 9.0 30 < th dose independent rect. 8 20
661 146.05 precipitation 0.1 30 < th dose independent rect. 4 4
664 146.05 precipitation 0.1 30 < th dose dependent rect. 4 4
670 146.07 wind 9.0 90 < th dose dependent rect. 2 6
694 146.16 radiation 40.0 30 < th dose dependent rect. 14 18
713 146.21 wind 1.0 270 > th dose independent rect. 11 8
745 146.23 precipitation 0.1 270 < th dose independent rect. 11 8
748 146.23 precipitation 0.1 270 < th dose dependent rect. 11 8
764 146.24 radiation 1.0 10 > th dose dependent rect. 6 9
822 146.35 radiation 1.0 10 > th dose dependent sin 1 NA
825 146.35 temperature 10.0 270 > th dose dependent rect. 10 22
828 146.36 temperature 10.0 270 > th dose independent rect. 18 8
829 146.36 humidity 50.0 270 > th dose independent rect. 18 8
830 146.36 radiation 10.0 270 < th dose independent rect. 18 8
840 146.36 atmosphere 1015.0 270 < th dose independent rect. 2 16
842 146.36 radiation 30.0 270 < th dose dependent rect. 18 8
847 146.37 radiation 10.0 270 < th dose dependent rect. 18 8
856 146.39 atmosphere 995.0 30 > th dose independent rect. 8 20
954 146.55 wind 9.0 270 < th dose independent rect. 11 8
994 146.57 atmosphere 995.0 270 > th dose independent rect. 18 8
997 146.57 temperature 10.0 270 > th dose independent rect. 6 19