Os06g0103900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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Os06g0103900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.83 | 0.289 | 8.99 | -0.231 | 0.388 | -0.644 | -0.592 | 0.773 | -0.358 | 11.1 | 25.77 | 258 | -- | -- |
| 38.51 | 0.289 | 8.98 | -0.193 | 0.538 | -0.62 | -1.1 | -- | -0.355 | 11.7 | 46.79 | 319 | -- | -- |
| 38.28 | 0.288 | 8.99 | -0.259 | 0.317 | -0.708 | -- | 1.19 | -0.369 | 9.93 | 20 | 257 | -- | -- |
| 43.37 | 0.307 | 8.99 | -0.247 | 0.518 | -0.746 | -- | -- | -0.372 | 10.8 | 50.36 | 338 | -- | -- |
| 39.48 | 0.293 | 8.99 | -0.232 | -- | -0.788 | -- | 1.18 | -0.353 | -- | 15.2 | 145 | -- | -- |
| 43.85 | 0.31 | 8.97 | -0.166 | 0.856 | -- | -1.18 | -- | -0.303 | 12.9 | -- | -- | -- | -- |
| 49.7 | 0.33 | 8.97 | -0.21 | 0.857 | -- | -- | -- | -0.31 | 12.8 | -- | -- | -- | -- |
| 46.33 | 0.317 | 8.99 | -0.251 | -- | -0.782 | -- | -- | -0.352 | -- | 15.82 | 156 | -- | -- |
| 44.97 | 0.312 | 8.98 | -- | 0.533 | -0.714 | -- | -- | -0.341 | 11 | 82.96 | 337 | -- | -- |
| 95.58 | 0.457 | 8.99 | -0.241 | -- | -- | -- | -- | -0.326 | -- | -- | -- | -- | -- |
| 50.86 | 0.334 | 8.97 | -- | 0.861 | -- | -- | -- | -0.286 | 12.9 | -- | -- | -- | -- |
| 47.9 | 0.322 | 8.99 | -- | -- | -0.751 | -- | -- | -0.313 | -- | 10 | 156 | -- | -- |
| 97.11 | 0.46 | 8.98 | -- | -- | -- | -- | -- | -0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.53 | radiation | 30 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 7 | 36.04 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 22 |
| 13 | 36.26 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 9 |
| 15 | 36.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 16 | 36.32 | radiation | 20 | 270 | < th | dose dependent | sin | 22 | NA |
| 19 | 36.33 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 27 | 36.49 | radiation | 10 | 270 | < th | dose independent | rect. | 5 | 15 |
| 37 | 36.60 | radiation | 20 | 90 | < th | dose dependent | sin | 20 | NA |
| 46 | 36.69 | radiation | 30 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 49 | 36.72 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 10 |
| 91 | 36.91 | radiation | 20 | 270 | > th | dose independent | rect. | 11 | 22 |
| 93 | 36.92 | radiation | 10 | 270 | < th | dose independent | sin | 23 | NA |
| 126 | 37.08 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 137 | 37.13 | radiation | 20 | 270 | > th | dose independent | rect. | 11 | 5 |
| 140 | 37.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 154 | 37.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 156 | 37.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 167 | 37.22 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 184 | 37.28 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 23 |
| 186 | 37.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 189 | 37.31 | radiation | 20 | 270 | > th | dose independent | sin | 19 | NA |
| 220 | 37.35 | radiation | 20 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 224 | 37.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 258 | 37.43 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 23 |
| 272 | 37.46 | radiation | 20 | 30 | < th | dose dependent | rect. | 6 | 16 |
| 275 | 37.47 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 10 |
| 301 | 37.54 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 8 |
| 313 | 37.56 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 8 |
| 354 | 37.64 | radiation | 1 | 270 | > th | dose dependent | sin | 20 | NA |
| 361 | 37.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 364 | 37.65 | radiation | 10 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 377 | 37.67 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 526 | 37.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 538 | 37.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 584 | 37.88 | temperature | 15 | 10 | > th | dose dependent | sin | 6 | NA |
| 586 | 37.88 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 9 |
| 587 | 37.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 10 |
| 601 | 37.90 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 6 |
| 612 | 37.91 | radiation | 40 | 720 | > th | dose independent | rect. | 11 | 3 |
| 633 | 37.92 | radiation | 10 | 30 | < th | dose dependent | rect. | 9 | 13 |
| 641 | 37.93 | temperature | 25 | 30 | < th | dose dependent | sin | 5 | NA |
| 642 | 37.93 | radiation | 30 | 270 | < th | dose dependent | no | NA | NA |
| 677 | 37.95 | radiation | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 689 | 37.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 10 |
| 740 | 37.99 | radiation | 10 | 30 | < th | dose independent | rect. | 9 | 13 |
| 752 | 38.00 | temperature | 25 | 270 | < th | dose dependent | sin | 7 | NA |
| 788 | 38.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 10 | 4 |
| 830 | 38.04 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 929 | 38.08 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 956 | 38.09 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |