Os06g0103300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase).
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Os06g0103300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.18 | 0.283 | 9.69 | 0.712 | 0.582 | -1.08 | -0.191 | 0.304 | 0.156 | 22 | 21.07 | 1252 | -- | -- |
| 36.17 | 0.28 | 9.7 | 0.616 | 0.585 | -1.05 | -0.126 | -- | 0.13 | 22.1 | 21.5 | 1230 | -- | -- |
| 35.94 | 0.279 | 9.67 | 0.829 | 0.579 | -1.09 | -- | 0.815 | 0.173 | 22.1 | 22.61 | 1253 | -- | -- |
| 36.25 | 0.28 | 9.7 | 0.623 | 0.597 | -1.05 | -- | -- | 0.124 | 22.1 | 21.6 | 1219 | -- | -- |
| 52.45 | 0.337 | 9.68 | 0.741 | -- | -0.991 | -- | 0.401 | 0.143 | -- | 21.84 | 1467 | -- | -- |
| 71.36 | 0.396 | 9.75 | 0.262 | 0.503 | -- | -0.223 | -- | -0.107 | 21.1 | -- | -- | -- | -- |
| 71.53 | 0.396 | 9.75 | 0.27 | 0.504 | -- | -- | -- | -0.107 | 21 | -- | -- | -- | -- |
| 52.54 | 0.338 | 9.68 | 0.636 | -- | -0.98 | -- | -- | 0.125 | -- | 21.3 | 1483 | -- | -- |
| 45.61 | 0.315 | 9.71 | -- | 0.578 | -0.897 | -- | -- | 0.0658 | 22 | 21.8 | 1227 | -- | -- |
| 86.14 | 0.434 | 9.73 | 0.271 | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
| 73.45 | 0.401 | 9.76 | -- | 0.504 | -- | -- | -- | -0.137 | 21.1 | -- | -- | -- | -- |
| 61.92 | 0.366 | 9.71 | -- | -- | -0.804 | -- | -- | 0.0155 | -- | 22 | 1463 | -- | -- |
| 88.07 | 0.438 | 9.74 | -- | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 7 | 36.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 19 | 36.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 29 | 36.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 35 | 36.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 41 | 37.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 44 | 37.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 46 | 37.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 58 | 37.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 63 | 37.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 64 | 37.06 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 104 | 37.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 135 | 37.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 138 | 37.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 163 | 37.27 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 183 | 37.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 184 | 37.32 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 202 | 37.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 209 | 37.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 237 | 37.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 248 | 37.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 249 | 37.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 254 | 37.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 265 | 37.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 272 | 37.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 275 | 37.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 302 | 37.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 325 | 37.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 362 | 37.64 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 370 | 37.65 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 402 | 37.69 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 413 | 37.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 18 |
| 586 | 37.80 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 588 | 37.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 619 | 37.83 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 638 | 37.85 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 639 | 37.85 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 675 | 37.88 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 700 | 37.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 723 | 37.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 755 | 37.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 15 |
| 761 | 37.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 785 | 37.97 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 809 | 38.00 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 850 | 38.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 862 | 38.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 866 | 38.05 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 886 | 38.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 914 | 38.09 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 956 | 38.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 997 | 38.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 18 |