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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0102800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0306) R2 : 0.241
β1 : 0.912 (0.112) R2dD : 0.119 R2D : 0.0994
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.21 (0.138) R2dE : 0.131 R2E : 0.114
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.233 (0.0659) R2dN8 : 0.0278 R2N8 : -0.0155
σ : 0.57
deviance : 149.83
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 47.78
memory length : 2626
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.16 0.572 3.49 0.749 0.0609 0.852 0.869 1.48 0.171 13.9 60.97 1410 -- --
149.27 0.569 3.47 0.907 0.23 1.05 1.14 -- 0.231 15.7 61.16 1988 -- --
150.13 0.571 3.49 0.737 0.0503 0.845 -- 1.82 0.156 1.77 59.1 1264 -- --
151.59 0.573 3.47 0.902 0.274 1.19 -- -- 0.257 18.5 62.6 2139 -- --
150.24 0.571 3.49 0.755 -- 0.828 -- 1.79 0.164 -- 59.39 1283 -- --
170.11 0.611 3.5 0.892 0.116 -- 1.02 -- 0.133 13.8 -- -- -- --
173.93 0.618 3.49 0.923 0.128 -- -- -- 0.138 11.9 -- -- -- --
149.83 0.57 3.47 0.912 -- 1.21 -- -- 0.233 -- 47.78 2626 -- --
171.01 0.609 3.48 -- 0.182 1.3 -- -- 0.232 19.9 75 2231 -- --
174.97 0.618 3.49 0.919 -- -- -- -- 0.136 -- -- -- -- --
196.39 0.656 3.51 -- 0.118 -- -- -- 0.0353 11.5 -- -- -- --
170.62 0.608 3.48 -- -- 1.22 -- -- 0.221 -- 64 2646 -- --
197.26 0.656 3.52 -- -- -- -- -- 0.0344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.24 radiation 30 4320 > th dose independent rect. 7 2
32 139.98 radiation 20 4320 > th dose dependent rect. 6 3
48 140.27 radiation 30 4320 < th dose independent rect. 24 9
49 140.27 radiation 30 4320 < th dose independent rect. 22 11
50 140.27 humidity 80 14400 > th dose dependent rect. 19 4
51 140.28 radiation 30 4320 < th dose independent rect. 6 3
52 140.28 radiation 30 4320 < th dose independent rect. 2 7
57 140.28 radiation 30 4320 < th dose independent rect. 17 16
79 140.35 humidity 90 14400 > th dose dependent rect. 18 8
80 140.38 wind 3 43200 < th dose independent rect. 24 4
81 140.39 humidity 90 14400 > th dose dependent rect. 15 11
90 140.52 wind 1 43200 > th dose dependent rect. 23 8
97 140.59 wind 5 43200 < th dose dependent rect. 24 7
124 140.71 wind 5 43200 < th dose dependent rect. 24 4
125 140.71 wind 9 43200 < th dose dependent rect. 23 8
137 140.83 humidity 80 14400 > th dose dependent rect. 19 1
138 140.84 wind 3 43200 > th dose independent rect. 24 8
146 140.92 wind 3 43200 > th dose independent rect. 24 5
149 140.93 wind 3 43200 > th dose independent rect. 2 2
163 141.02 humidity 90 14400 > th dose dependent sin 16 NA
187 141.18 humidity 70 14400 < th dose independent rect. 18 1
188 141.20 humidity 80 14400 > th dose independent rect. 8 3
189 141.20 humidity 60 14400 > th dose dependent rect. 14 1
191 141.21 humidity 70 14400 > th dose independent rect. 13 1
217 141.28 humidity 60 14400 > th dose dependent rect. 12 3
221 141.31 humidity 90 14400 > th dose dependent rect. 6 20
237 141.41 wind 1 43200 > th dose dependent rect. 4 3
246 141.47 humidity 70 14400 < th dose independent rect. 18 14
313 141.76 humidity 80 14400 > th dose independent rect. 8 13
347 141.85 wind 9 43200 < th dose dependent rect. 4 3
374 141.91 humidity 80 14400 < th dose independent rect. 8 12
375 141.92 humidity 90 14400 > th dose dependent rect. 6 2
390 141.97 humidity 80 1440 > th dose dependent rect. 6 8
411 142.04 humidity 70 14400 > th dose dependent rect. 9 14
436 142.11 wind 1 43200 > th dose dependent rect. 24 4
456 142.17 humidity 80 1440 > th dose dependent rect. 6 6
471 142.20 humidity 70 14400 > th dose dependent rect. 13 7
486 142.23 humidity 90 1440 < th dose independent rect. 6 8
492 142.24 wind 3 43200 > th dose independent rect. 24 13
493 142.24 humidity 70 14400 > th dose dependent sin 20 NA
495 142.24 humidity 70 14400 > th dose dependent rect. 10 10
575 142.40 humidity 90 1440 > th dose independent rect. 6 8
590 142.44 humidity 70 14400 < th dose independent rect. 18 4
594 142.44 humidity 80 14400 < th dose independent rect. 13 8
607 142.44 wind 1 43200 > th dose dependent rect. 23 14
703 142.58 wind 9 43200 < th dose dependent rect. 23 14
704 142.59 radiation 1 4320 > th dose independent rect. 18 17
712 142.60 wind 5 43200 < th dose dependent rect. 23 14
731 142.62 humidity 90 14400 > th dose dependent rect. 14 20
734 142.63 humidity 80 14400 > th dose independent rect. 13 8
742 142.63 humidity 90 14400 > th dose dependent rect. 14 18
751 142.65 radiation 1 4320 > th dose independent rect. 18 15
756 142.66 radiation 1 4320 > th dose dependent rect. 7 2
786 142.69 humidity 90 14400 > th dose dependent rect. 9 23
787 142.70 humidity 80 14400 < th dose independent rect. 8 3
847 142.75 humidity 90 14400 < th dose independent rect. 6 2
901 142.81 humidity 90 14400 > th dose dependent no NA NA
915 142.82 radiation 40 4320 < th dose dependent rect. 7 2
967 142.89 wind 3 43200 < th dose independent sin 7 NA
977 142.89 humidity 90 14400 > th dose dependent rect. 18 23
978 142.90 wind 3 43200 > th dose independent sin 7 NA
997 142.92 humidity 80 14400 > th dose independent rect. 7 8