FiT-DB / Search/ Help/ Sample detail

Os06g0102100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0623) R2 : 0.688
β1 : -4.1 (0.255) R2dD : 0.256 R2D : 0.172
β2 : 2.22 (0.15) R2dC : 0.154 R2C : 0.0797
β3 : 4.91 (0.229) R2dE : 0.379 R2E : 0.19
β4 : 5.37 (0.628) R2dD*C : 0.0513 R2D*C : 0.0155
β5 : 4.03 (0.912) R2dD*E : 0.0191 R2D*E : 0.0814
γ1 : -0.545 (0.138) R2dN8 : 0.0172 R2N8 : -0.0399
σ : 1.11
deviance : 559.85
__
_____
C
peak time of C : 8.43
E
wheather : humidity
threshold : 79.8
memory length : 1366
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.92
open length of G : 8.34

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
559.85 1.11 12.7 -4.1 2.22 4.91 5.37 4.03 -0.545 8.43 79.8 1366 6.92 8.34
583.48 1.13 12.8 -4.66 2.3 5.21 5.34 -- -0.766 8.37 79.84 1360 6.87 8.27
643.6 1.18 12.7 -3.96 2.06 4.87 -- 3.89 -0.61 7.6 79.86 1406 6.85 8.35
660.01 1.2 12.8 -4.51 2.28 5.11 -- -- -0.726 8.09 79.99 1367 6.92 7.97
829.29 1.34 12.7 -3.91 -- 4.81 -- 4.14 -0.405 -- 79.78 1468 6.88 7.92
1224.22 1.64 12.6 -3.52 1.9 -- 4.58 -- 0.0896 7.32 -- -- -- --
1277.89 1.67 12.6 -3.43 1.93 -- -- -- 0.076 6.88 -- -- -- --
857.41 1.36 12.8 -4.38 -- 5.17 -- -- -0.57 -- 80 1458 6.87 7.83
1084.24 1.53 12.7 -- 2.2 5.07 -- -- -0.38 7.95 83.04 1381 7.13 8.42
1473.11 1.79 12.7 -3.39 -- -- -- -- 0.113 -- -- -- -- --
1588.15 1.86 12.5 -- 1.89 -- -- -- 0.458 6.99 -- -- -- --
1231.64 1.63 12.8 -- -- 5.41 -- -- -0.211 -- 84 1468 6.6 8.93
1776.21 1.97 12.6 -- -- -- -- -- 0.489 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 583.92 humidity 80 1440 < th dose independent rect. 7 8
3 594.31 humidity 80 1440 > th dose independent rect. 7 8
15 610.25 humidity 70 1440 > th dose dependent rect. 7 8
18 611.35 humidity 80 1440 < th dose independent sin 2 NA
24 616.33 humidity 80 1440 > th dose independent sin 1 NA
31 620.03 humidity 60 1440 > th dose dependent sin 1 NA
51 624.65 humidity 70 720 > th dose dependent rect. 7 17
62 627.26 humidity 60 1440 > th dose dependent rect. 5 14
71 628.03 humidity 80 1440 > th dose independent rect. 6 13
200 639.83 humidity 70 1440 > th dose independent rect. 18 20
298 644.56 humidity 90 1440 < th dose dependent sin 3 NA
316 645.22 humidity 90 1440 < th dose dependent rect. 16 22
328 645.73 humidity 60 1440 > th dose dependent rect. 10 3
400 648.60 humidity 50 1440 > th dose dependent rect. 16 23
423 649.92 humidity 90 1440 < th dose dependent rect. 3 20
453 650.85 humidity 90 1440 < th dose dependent rect. 13 23
458 651.00 humidity 50 1440 > th dose dependent no NA NA
478 651.51 humidity 60 720 > th dose dependent sin 19 NA
500 651.84 humidity 50 1440 > th dose dependent rect. 13 23
505 651.93 humidity 90 1440 < th dose dependent rect. 21 22
560 653.27 humidity 90 1440 < th dose dependent no NA NA
574 654.05 humidity 90 1440 < th dose dependent rect. 5 10
722 659.54 humidity 70 1440 > th dose independent rect. 15 23
762 660.87 humidity 70 1440 > th dose independent rect. 8 19
764 660.89 humidity 70 1440 > th dose independent rect. 8 17
766 660.91 humidity 70 1440 > th dose independent rect. 8 21
767 660.91 humidity 70 1440 > th dose independent rect. 8 23
815 662.43 humidity 70 1440 > th dose independent rect. 24 21
816 662.44 humidity 70 1440 > th dose independent rect. 2 23
828 662.46 humidity 70 1440 > th dose independent rect. 4 23
836 662.48 humidity 70 1440 > th dose independent rect. 4 21
858 662.52 humidity 70 1440 > th dose independent no NA NA
947 664.96 humidity 70 1440 < th dose independent rect. 18 22