Os06g0101800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC-domain protein 1-1.
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Os06g0101800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAC-domain protein 1-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.63 | 0.272 | 9.73 | -0.422 | 0.68 | 0.78 | -0.233 | 0.252 | -0.0118 | 2.15 | 21.5 | 1221 | -- | -- |
| 33.62 | 0.27 | 9.73 | -0.472 | 0.667 | 0.789 | -0.166 | -- | -0.0224 | 2.17 | 22.01 | 1196 | -- | -- |
| 33.77 | 0.271 | 9.73 | -0.468 | 0.673 | 0.789 | -- | 0.0307 | -0.0167 | 2.17 | 22.2 | 1192 | -- | -- |
| 33.77 | 0.271 | 9.74 | -0.477 | 0.669 | 0.8 | -- | -- | -0.0206 | 2.23 | 22.15 | 1182 | -- | -- |
| 57.64 | 0.354 | 9.76 | -0.741 | -- | 1.11 | -- | -0.9 | -0.0705 | -- | 23.64 | 1127 | -- | -- |
| 53.95 | 0.344 | 9.7 | -0.225 | 0.809 | -- | -0.0896 | -- | 0.144 | 2.01 | -- | -- | -- | -- |
| 53.98 | 0.344 | 9.7 | -0.222 | 0.809 | -- | -- | -- | 0.145 | 2 | -- | -- | -- | -- |
| 57.99 | 0.355 | 9.73 | -0.515 | -- | 1.03 | -- | -- | -0.0281 | -- | 23.06 | 1118 | -- | -- |
| 39.34 | 0.292 | 9.72 | -- | 0.68 | 0.679 | -- | -- | 0.0534 | 2.16 | 22.3 | 1180 | -- | -- |
| 93.33 | 0.451 | 9.69 | -0.188 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 55.28 | 0.348 | 9.69 | -- | 0.805 | -- | -- | -- | 0.169 | 2 | -- | -- | -- | -- |
| 64.37 | 0.374 | 9.72 | -- | -- | 0.913 | -- | -- | 0.0638 | -- | 23.66 | 1121 | -- | -- |
| 94.27 | 0.453 | 9.69 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 2 | 33.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 4 | 33.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 6 | 33.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 14 | 33.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 19 | 34.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 28 | 34.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 77 | 34.45 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 78 | 34.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 89 | 34.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 107 | 34.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 114 | 34.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 145 | 34.65 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 168 | 34.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 230 | 34.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 304 | 34.82 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 326 | 34.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 640 | 35.19 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 677 | 35.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 697 | 35.25 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 707 | 35.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 708 | 35.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 728 | 35.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 844 | 35.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 879 | 35.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 888 | 35.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 966 | 35.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |