Os06g0101100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0101100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.7 | 0.478 | 7.62 | 0.893 | 0.899 | 1.3 | -0.0863 | 1.59 | -0.0291 | 22.2 | 19.61 | 10 | -- | -- |
| 105.77 | 0.483 | 7.66 | 0.609 | 0.917 | 1.4 | -0.427 | -- | -0.11 | 22.2 | 19.61 | 10 | -- | -- |
| 103.54 | 0.474 | 7.62 | 0.912 | 0.903 | 1.37 | -- | 1.83 | -0.0305 | 22.1 | 18.11 | 4 | -- | -- |
| 106.5 | 0.484 | 7.66 | 0.626 | 0.92 | 1.41 | -- | -- | -0.109 | 22.2 | 19.61 | 10 | -- | -- |
| 126.8 | 0.524 | 7.61 | 0.705 | -- | 1.5 | -- | 0.883 | -0.0701 | -- | 16.8 | 556 | -- | -- |
| 135.03 | 0.545 | 7.6 | 0.912 | 0.818 | -- | -0.239 | -- | 0.129 | 20 | -- | -- | -- | -- |
| 135.19 | 0.544 | 7.6 | 0.919 | 0.82 | -- | -- | -- | 0.129 | 19.9 | -- | -- | -- | -- |
| 127.28 | 0.525 | 7.63 | 0.532 | -- | 1.51 | -- | -- | -0.124 | -- | 17 | 578 | -- | -- |
| 115.77 | 0.501 | 7.68 | -- | 0.952 | 1.7 | -- | -- | -0.214 | 22.5 | 18.1 | 13 | -- | -- |
| 171.79 | 0.612 | 7.58 | 0.911 | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
| 157.46 | 0.587 | 7.62 | -- | 0.814 | -- | -- | -- | 0.0267 | 20 | -- | -- | -- | -- |
| 134.08 | 0.539 | 7.65 | -- | -- | 1.71 | -- | -- | -0.211 | -- | 16.65 | 586 | -- | -- |
| 193.67 | 0.65 | 7.6 | -- | -- | -- | -- | -- | 0.0173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 7 | 98.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 12 | 98.67 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 14 | 98.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 26 | 99.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 43 | 100.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 110 | 101.43 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 118 | 101.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 129 | 101.87 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 143 | 102.10 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 19 |
| 148 | 102.13 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 21 |
| 172 | 102.45 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 190 | 102.68 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 225 | 103.08 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 254 | 103.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 283 | 103.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 290 | 103.73 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 334 | 104.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 335 | 104.08 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 358 | 104.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 398 | 104.48 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 401 | 104.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 424 | 104.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 425 | 104.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 429 | 104.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 439 | 104.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 466 | 104.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 471 | 104.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 487 | 105.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 495 | 105.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 509 | 105.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 523 | 105.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 534 | 105.44 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 11 |
| 566 | 105.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 633 | 106.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 652 | 106.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 694 | 106.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 698 | 106.43 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 7 |
| 766 | 106.76 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 23 |
| 772 | 106.79 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 23 |
| 775 | 106.81 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 780 | 106.84 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 873 | 107.18 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 23 |
| 930 | 107.44 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 22 |
| 993 | 107.65 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |