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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0101000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0172) R2 : 0.197
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.382 (0.0362) R2dN8 : 0.254 R2N8 : 0.197
σ : 0.324
deviance : 48.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.72 0.214 12.2 0.118 0.692 0.476 0.067 -0.126 0.403 0.822 49.12 1239 -- --
20.67 0.212 12.2 0.0996 0.718 0.499 0.0757 -- 0.4 0.645 48.8 1139 -- --
20.63 0.212 12.2 0.123 0.747 0.542 -- -0.201 0.404 0.565 48.86 1085 -- --
20.67 0.212 12.2 0.105 0.745 0.531 -- -- 0.399 0.566 49.63 1086 -- --
32.49 0.267 12.2 0.0856 -- 0.668 -- -0.223 0.399 -- 48.86 1085 -- --
25.32 0.236 12.2 0.0756 0.601 -- 0.02 -- 0.382 0.757 -- -- -- --
25.32 0.236 12.2 0.0749 0.601 -- -- -- 0.382 0.759 -- -- -- --
31.73 0.263 12.2 0.0786 -- 0.571 -- -- 0.411 -- 59.94 3104 -- --
20.95 0.213 12.2 -- 0.742 0.515 -- -- 0.387 0.58 49.84 1090 -- --
47.9 0.323 12.2 0.0967 -- -- -- -- 0.393 -- -- -- -- --
25.47 0.236 12.2 -- 0.602 -- -- -- 0.374 0.765 -- -- -- --
30.91 0.26 12.2 -- -- 0.527 -- -- 0.425 -- 69 1658 -- --
48.14 0.324 12.2 -- -- -- -- -- 0.382 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.94 humidity 50 720 > th dose dependent rect. 15 14
2 19.95 humidity 50 720 > th dose dependent rect. 17 2
5 20.09 humidity 70 1440 > th dose dependent rect. 11 2
9 20.18 humidity 50 720 > th dose dependent rect. 15 6
10 20.20 humidity 80 1440 < th dose independent rect. 11 2
11 20.21 humidity 80 1440 > th dose independent rect. 11 2
20 20.32 humidity 50 720 > th dose dependent rect. 11 17
21 20.33 humidity 80 1440 < th dose independent rect. 7 13
56 20.48 humidity 80 1440 > th dose independent rect. 6 15
61 20.49 humidity 80 1440 < th dose independent rect. 9 11
66 20.50 humidity 80 1440 < th dose independent sin 0 NA
84 20.54 humidity 80 1440 > th dose independent rect. 9 12
95 20.55 humidity 50 720 > th dose dependent sin 16 NA
99 20.56 humidity 80 1440 > th dose independent sin 23 NA
102 20.56 radiation 10 1440 > th dose independent rect. 11 20
125 20.61 radiation 10 1440 > th dose independent rect. 11 7
142 20.62 radiation 10 1440 > th dose independent rect. 11 5
182 20.68 humidity 60 1440 > th dose dependent rect. 11 10
192 20.70 humidity 90 1440 < th dose dependent rect. 11 10
209 20.74 humidity 70 720 > th dose independent rect. 15 4
230 20.76 humidity 90 720 < th dose dependent rect. 13 11
304 20.82 humidity 90 1440 < th dose dependent rect. 11 6
334 20.83 humidity 90 720 < th dose dependent rect. 13 18
365 20.85 humidity 60 1440 > th dose dependent sin 21 NA
434 20.87 radiation 10 1440 < th dose dependent rect. 10 8
470 20.89 humidity 90 1440 < th dose dependent sin 20 NA
482 20.89 radiation 10 1440 < th dose dependent rect. 10 15
484 20.89 radiation 10 1440 < th dose dependent rect. 10 17
560 20.92 humidity 70 720 > th dose independent rect. 14 15
577 20.92 humidity 50 1440 > th dose dependent rect. 1 20
605 20.94 humidity 70 1440 > th dose independent rect. 11 13
609 20.94 humidity 70 1440 > th dose independent rect. 11 17
615 20.94 humidity 90 720 < th dose dependent sin 16 NA
666 20.96 humidity 70 1440 > th dose independent rect. 14 2
698 20.96 humidity 90 1440 < th dose dependent rect. 1 20
821 20.99 humidity 50 720 > th dose dependent rect. 15 21
849 21.00 humidity 90 1440 < th dose dependent rect. 5 16
998 21.04 radiation 10 1440 > th dose independent sin 18 NA
999 21.04 humidity 70 1440 < th dose independent rect. 14 1