Os05g0597200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os05g0597200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.85 | 0.175 | 10.8 | 0.612 | 0.162 | 0.686 | -0.105 | -0.0113 | 0.161 | 20.7 | 1 | 1 | -- | -- |
| 13.84 | 0.173 | 10.8 | 0.615 | 0.165 | 0.682 | -0.104 | -- | 0.162 | 20.6 | -0.9005 | 3 | -- | -- |
| 13.87 | 0.173 | 10.8 | 0.625 | 0.166 | 0.674 | -- | 0.0413 | 0.165 | 20.5 | 0.02277 | 3 | -- | -- |
| 13.87 | 0.173 | 10.8 | 0.62 | 0.166 | 0.675 | -- | -- | 0.163 | 20.5 | -2.104 | 3 | -- | -- |
| 14.44 | 0.177 | 10.8 | 0.584 | -- | 0.683 | -- | -0.104 | 0.161 | -- | -1.333 | 248 | -- | -- |
| 18.19 | 0.2 | 10.8 | 0.751 | 0.245 | -- | 0.179 | -- | 0.258 | 17 | -- | -- | -- | -- |
| 18.27 | 0.2 | 10.8 | 0.751 | 0.246 | -- | -- | -- | 0.258 | 17.1 | -- | -- | -- | -- |
| 14.44 | 0.177 | 10.8 | 0.603 | -- | 0.686 | -- | -- | 0.16 | -- | -2.819 | 248 | -- | -- |
| 22.95 | 0.223 | 10.8 | -- | 0.184 | 0.987 | -- | -- | 0.0567 | 22.7 | 13.05 | 21 | -- | -- |
| 21.45 | 0.216 | 10.8 | 0.742 | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
| 33.13 | 0.269 | 10.8 | -- | 0.233 | -- | -- | -- | 0.175 | 17.2 | -- | -- | -- | -- |
| 23.38 | 0.225 | 10.8 | -- | -- | 0.887 | -- | -- | 0.0706 | -- | 10.9 | 256 | -- | -- |
| 35.98 | 0.28 | 10.8 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 2 | 13.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 4 | 13.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 20 |
| 7 | 13.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 15 | 13.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 23 | 13.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 27 | 13.85 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 35 | 13.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 36 | 13.87 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 42 | 13.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 48 | 13.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 50 | 13.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 55 | 13.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 79 | 13.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 107 | 14.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 114 | 14.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 117 | 14.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 119 | 14.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 145 | 14.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 147 | 14.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 168 | 14.24 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 179 | 14.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 181 | 14.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 195 | 14.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 196 | 14.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 206 | 14.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 222 | 14.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 223 | 14.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 237 | 14.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 305 | 14.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 367 | 14.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 433 | 14.40 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 462 | 14.41 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 493 | 14.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 496 | 14.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 519 | 14.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 613 | 14.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 847 | 14.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 861 | 14.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 868 | 14.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 977 | 14.55 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 20 |
| 981 | 14.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |