Os05g0596000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os05g0596000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 378.55 | 0.914 | 3.32 | 0.785 | 0.144 | 1.37 | 0.144 | 6.39 | 0.00135 | 10.6 | 5.12 | 1514 | -- | -- |
| 385.01 | 0.914 | 3.2 | 0.865 | 0.131 | 0.907 | 0.073 | -- | 0.116 | 10.4 | 5.392 | 10840 | -- | -- |
| 378.49 | 0.906 | 3.32 | 0.795 | 0.144 | 1.39 | -- | 6.47 | 0.00505 | 9.98 | 5.2 | 1537 | -- | -- |
| 383.48 | 0.912 | 3.19 | 1.02 | 0.111 | 1.17 | -- | -- | 0.184 | 9.28 | 5.203 | 11607 | -- | -- |
| 379.79 | 0.908 | 3.32 | 0.797 | -- | 1.37 | -- | 6.45 | 0.0101 | -- | 5.2 | 1537 | -- | -- |
| 398.75 | 0.936 | 3.21 | 0.483 | 0.103 | -- | -0.198 | -- | 0.0833 | 8.61 | -- | -- | -- | -- |
| 398.82 | 0.935 | 3.21 | 0.478 | 0.105 | -- | -- | -- | 0.0841 | 9.79 | -- | -- | -- | -- |
| 384.36 | 0.913 | 3.19 | 1.06 | -- | 1.16 | -- | -- | 0.205 | -- | 5.257 | 11607 | -- | -- |
| 402.76 | 0.935 | 3.2 | -- | 0.144 | 0.631 | -- | -- | 0.0591 | 8.39 | 5.2 | 10812 | -- | -- |
| 399.48 | 0.934 | 3.21 | 0.477 | -- | -- | -- | -- | 0.0842 | -- | -- | -- | -- | -- |
| 404.84 | 0.941 | 3.22 | -- | 0.104 | -- | -- | -- | 0.0309 | 9.45 | -- | -- | -- | -- |
| 402.38 | 0.934 | 3.22 | -- | -- | 0.445 | -- | -- | 0.0391 | -- | 5.195 | 10242 | -- | -- |
| 405.48 | 0.94 | 3.23 | -- | -- | -- | -- | -- | 0.0313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 365.16 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 2 | 365.18 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 5 | 365.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 7 | 365.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 10 | 366.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 11 | 366.24 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 13 | 366.36 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 14 | 366.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 39 | 367.47 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 42 | 367.64 | wind | 5 | 1440 | > th | dose dependent | rect. | 19 | 15 |
| 52 | 367.97 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 67 | 368.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 93 | 368.64 | wind | 5 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 107 | 368.73 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 2 |
| 117 | 368.77 | wind | 5 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 123 | 368.79 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 124 | 368.79 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 9 |
| 149 | 368.88 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 8 | NA |
| 156 | 368.91 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 165 | 368.93 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 205 | 369.02 | atmosphere | 995 | 43200 | > th | dose independent | sin | 15 | NA |
| 227 | 369.05 | wind | 5 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 287 | 369.20 | atmosphere | 995 | 43200 | < th | dose independent | sin | 15 | NA |
| 351 | 369.31 | atmosphere | 1005 | 43200 | < th | dose dependent | no | NA | NA |
| 358 | 369.31 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 361 | 369.31 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 473 | 369.46 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 618 | 369.69 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 626 | 369.70 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 677 | 369.74 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 683 | 369.75 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 684 | 369.75 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 749 | 369.81 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 838 | 369.96 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 921 | 370.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 945 | 370.15 | wind | 5 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 996 | 370.23 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 4 |