Os05g0595800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os05g0595800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 430.58 | 0.975 | 3.64 | 2.36 | 0.271 | -1.63 | 0.906 | 20.6 | -0.325 | 15.7 | 31.26 | 4297 | -- | -- |
| 476.99 | 1.03 | 4.04 | -0.648 | 0.0985 | 0.339 | 0.772 | -- | -0.426 | 16.7 | 31.26 | 4297 | -- | -- |
| 432.67 | 0.969 | 3.64 | 2.38 | 0.279 | -1.64 | -- | 20.6 | -0.321 | 14.5 | 31.25 | 4295 | -- | -- |
| 451.79 | 0.99 | 3.98 | -0.802 | 0.274 | 0.913 | -- | -- | -0.26 | 15.5 | 29.8 | 4106 | -- | -- |
| 437.22 | 0.974 | 3.65 | 2.33 | -- | -1.65 | -- | 20.4 | -0.333 | -- | 31.21 | 4267 | -- | -- |
| 479.36 | 1.03 | 4.04 | -0.625 | 0.172 | -- | 0.826 | -- | -0.447 | 16.2 | -- | -- | -- | -- |
| 480.84 | 1.03 | 4.04 | -0.616 | 0.19 | -- | -- | -- | -0.442 | 14.4 | -- | -- | -- | -- |
| 455.05 | 0.994 | 4 | -0.848 | -- | 0.929 | -- | -- | -0.32 | -- | 29.8 | 4149 | -- | -- |
| 469.28 | 1.01 | 4 | -- | 0.271 | 0.786 | -- | -- | -0.257 | 14.2 | 29.81 | 4102 | -- | -- |
| 482.98 | 1.03 | 4.04 | -0.624 | -- | -- | -- | -- | -0.447 | -- | -- | -- | -- | -- |
| 490.82 | 1.04 | 4.02 | -- | 0.202 | -- | -- | -- | -0.374 | 14.5 | -- | -- | -- | -- |
| 473.64 | 1.01 | 4 | -- | -- | 0.744 | -- | -- | -0.268 | -- | 29.89 | 4119 | -- | -- |
| 493.23 | 1.04 | 4.02 | -- | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 429.06 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 2 | 429.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 3 | 429.46 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 17 | 429.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 21 | 429.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 22 | 429.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 35 | 429.72 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 5 |
| 52 | 429.78 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 60 | 429.83 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 122 | 430.25 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 123 | 430.26 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 148 | 430.46 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 183 | 430.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 264 | 432.51 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 268 | 432.64 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 349 | 433.43 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 564 | 434.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 565 | 434.51 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 588 | 434.79 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 633 | 435.17 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 666 | 435.73 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 6 | NA |
| 673 | 435.84 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 21 | 13 |
| 674 | 435.86 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 699 | 436.13 | humidity | 80 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 711 | 436.37 | atmosphere | 1010 | 720 | < th | dose dependent | sin | 13 | NA |
| 728 | 436.45 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 12 |
| 729 | 436.47 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 760 | 436.97 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 777 | 437.06 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 16 | 19 |
| 810 | 437.29 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 813 | 437.31 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 828 | 437.49 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 837 | 437.62 | atmosphere | 1000 | 10 | < th | dose independent | sin | 5 | NA |
| 839 | 437.63 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 861 | 437.70 | atmosphere | 1010 | 270 | < th | dose dependent | sin | 9 | NA |
| 882 | 437.86 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 885 | 437.88 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 916 | 437.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 939 | 438.12 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 955 | 438.25 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 19 | 19 |
| 965 | 438.29 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |