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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0595000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Allergen V5/Tpx-1 related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.04 (0.0421) R2 : 0.556
β1 : 1.54 (0.153) R2dD : 0.106 R2D : 0.076
β2 : 0.865 (0.107) R2dC : 0.0642 R2C : 0.0683
β3 : -2.45 (0.158) R2dE : 0.279 R2E : 0.051
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.6 (0.682) R2dD*E : 0.321 R2D*E : 0.151
γ1 : 0.137 (0.092) R2dN8 : 0.0032 R2N8 : -0.0101
σ : 0.768
deviance : 272.11
__
_____
C
peak time of C : 6.76
E
wheather : wind
threshold : 6.658
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 3.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
271.92 0.775 4.04 1.54 0.857 -2.47 -0.322 -11.8 0.137 6.65 6.647 4322 18.3 3.03
378.42 0.906 4.04 1.51 0.953 -2.16 -0.451 -- 0.139 6.49 8.513 4319 18.5 2.97
272.11 0.768 4.04 1.54 0.865 -2.45 -- -11.6 0.137 6.76 6.658 4321 18.3 3.03
371.86 0.898 4.04 1.22 0.85 -2.34 -- -- 0.176 6.28 8.549 4319 18.6 2.92
307.77 0.817 4.04 1.56 -- -2.43 -- -11.5 0.16 -- 6.604 4328 18.3 2.98
521.55 1.07 3.99 1.31 0.897 -- 0.0854 -- 0.000155 7.14 -- -- -- --
521.57 1.07 3.99 1.31 0.898 -- -- -- -0.000165 7.12 -- -- -- --
391.32 0.921 4 1.18 -- -3.12 -- -- 0.267 -- 8.647 4322 18.6 2.86
406 0.938 4.04 -- 0.865 -2.48 -- -- 0.147 6.86 8.55 4319 18.6 2.99
564.11 1.11 4.01 1.33 -- -- -- -- 0.0158 -- -- -- -- --
567.14 1.11 4.02 -- 0.912 -- -- -- -0.147 7.02 -- -- -- --
429.34 0.965 4 -- -- -2.96 -- -- 0.155 -- 8.6 4321 18.6 2.75
610.92 1.15 4.04 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.88 wind 7 4320 < th dose independent rect. 18 3
6 287.57 wind 7 4320 > th dose independent rect. 18 3
9 290.99 wind 5 4320 > th dose dependent rect. 19 2
13 291.92 wind 7 4320 < th dose independent rect. 18 9
29 297.75 wind 7 4320 > th dose dependent rect. 18 9
49 298.74 wind 9 4320 < th dose independent rect. 20 7
52 298.96 wind 7 4320 > th dose independent rect. 18 9
144 310.84 atmosphere 995 14400 < th dose independent rect. 16 1
145 311.00 atmosphere 995 14400 > th dose independent rect. 16 5
147 311.11 atmosphere 995 14400 < th dose dependent rect. 16 1
148 311.12 atmosphere 995 14400 > th dose independent rect. 16 3
157 311.39 atmosphere 995 14400 < th dose independent rect. 18 1
160 311.39 atmosphere 995 14400 < th dose dependent rect. 18 1
186 313.10 atmosphere 995 14400 > th dose independent rect. 13 8
239 314.14 atmosphere 995 14400 > th dose independent rect. 7 14
240 314.19 atmosphere 995 14400 > th dose independent rect. 7 12
417 324.71 atmosphere 1000 14400 < th dose dependent rect. 8 1
451 325.57 atmosphere 1000 14400 < th dose dependent rect. 8 4
471 326.06 atmosphere 1000 14400 < th dose dependent rect. 11 1
484 326.49 atmosphere 995 14400 > th dose independent rect. 20 20
538 328.31 atmosphere 995 14400 > th dose independent sin 22 NA
541 328.48 atmosphere 995 14400 < th dose independent sin 22 NA
569 329.00 atmosphere 1000 14400 < th dose dependent rect. 20 16
579 329.13 radiation 1 14400 < th dose dependent rect. 23 4
588 329.27 atmosphere 1000 14400 < th dose dependent sin 5 NA
595 329.33 atmosphere 995 14400 < th dose dependent sin 23 NA
598 329.39 atmosphere 995 14400 > th dose independent sin 3 NA
637 329.72 radiation 1 14400 < th dose dependent rect. 19 8
706 330.56 atmosphere 995 14400 < th dose independent sin 3 NA
782 331.01 atmosphere 1000 14400 < th dose dependent rect. 24 21
809 331.12 atmosphere 1000 14400 < th dose dependent rect. 2 1
856 331.34 atmosphere 1000 14400 < th dose dependent rect. 4 23
858 331.35 atmosphere 1000 14400 < th dose dependent no NA NA
887 331.49 atmosphere 1000 14400 < th dose dependent rect. 8 23
904 331.56 atmosphere 1000 14400 < th dose dependent rect. 10 23