Os05g0592800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 2).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0592800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.56 | 0.218 | 11.7 | 0.363 | 0.574 | 0.866 | 0.164 | -0.462 | 0.0285 | 6.1 | 30.76 | 270 | -- | -- |
| 21.67 | 0.217 | 11.7 | 0.298 | 0.555 | 0.893 | 0.0159 | -- | 0.0124 | 5.82 | 30.84 | 331 | -- | -- |
| 21.61 | 0.217 | 11.7 | 0.358 | 0.575 | 0.869 | -- | -0.445 | 0.0252 | 6.04 | 31.04 | 274 | -- | -- |
| 21.64 | 0.217 | 11.7 | 0.297 | 0.565 | 0.892 | -- | -- | 0.00271 | 5.72 | 30.9 | 359 | -- | -- |
| 33.73 | 0.27 | 11.7 | 0.469 | -- | 1.49 | -- | -0.399 | 0.0859 | -- | 35.85 | 339 | -- | -- |
| 31.18 | 0.262 | 11.7 | 0.0737 | 0.822 | -- | 0.0787 | -- | -0.153 | 5.59 | -- | -- | -- | -- |
| 31.2 | 0.262 | 11.7 | 0.074 | 0.823 | -- | -- | -- | -0.154 | 5.58 | -- | -- | -- | -- |
| 33.72 | 0.27 | 11.7 | 0.415 | -- | 1.45 | -- | -- | 0.0623 | -- | 32.9 | 355 | -- | -- |
| 23.55 | 0.226 | 11.7 | -- | 0.613 | 0.747 | -- | -- | -0.0455 | 5.53 | 31.02 | 384 | -- | -- |
| 66.38 | 0.381 | 11.8 | 0.101 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 31.34 | 0.262 | 11.7 | -- | 0.824 | -- | -- | -- | -0.162 | 5.58 | -- | -- | -- | -- |
| 37.88 | 0.287 | 11.7 | -- | -- | 1.34 | -- | -- | 0.0079 | -- | 51.36 | 339 | -- | -- |
| 66.65 | 0.381 | 11.8 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 12 | 21.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 30 | 21.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 37 | 21.59 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 39 | 21.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 40 | 21.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 44 | 21.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 13 |
| 46 | 21.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 49 | 21.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 72 | 21.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 180 | 21.84 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 194 | 21.85 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 206 | 21.86 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 362 | 21.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 370 | 22.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 402 | 22.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 550 | 22.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 618 | 22.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 619 | 22.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 620 | 22.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 635 | 22.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 648 | 22.21 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 725 | 22.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 742 | 22.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 761 | 22.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 778 | 22.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 9 |
| 779 | 22.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 797 | 22.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 836 | 22.31 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 892 | 22.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 957 | 22.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |