Os05g0592600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Initiation factor 2 family protein.
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Os05g0592600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Initiation factor 2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.6 | 0.242 | 11.1 | 1.12 | 0.463 | -0.639 | 0.112 | 1.13 | -0.0764 | 16.1 | 9.253 | 779 | -- | -- |
| 27.71 | 0.245 | 11.1 | 0.91 | 0.398 | -0.562 | -0.0169 | -- | -0.131 | 15.5 | 10.31 | 1047 | -- | -- |
| 26.63 | 0.24 | 11.1 | 1.12 | 0.465 | -0.636 | -- | 1.13 | -0.0764 | 16.1 | 9.011 | 776 | -- | -- |
| 27.64 | 0.245 | 11.1 | 0.909 | 0.436 | -0.609 | -- | -- | -0.131 | 16 | 12.14 | 857 | -- | -- |
| 35.08 | 0.276 | 11.1 | 1.15 | -- | -0.712 | -- | 0.999 | -0.0608 | -- | 14.98 | 1100 | -- | -- |
| 32.68 | 0.268 | 11.2 | 0.754 | 0.45 | -- | -0.038 | -- | -0.228 | 15 | -- | -- | -- | -- |
| 32.68 | 0.268 | 11.2 | 0.754 | 0.45 | -- | -- | -- | -0.228 | 15 | -- | -- | -- | -- |
| 35.93 | 0.279 | 11.1 | 0.944 | -- | -0.706 | -- | -- | -0.117 | -- | 9.036 | 1109 | -- | -- |
| 47 | 0.319 | 11.2 | -- | 0.475 | -0.226 | -- | -- | -0.284 | 15.4 | 9.079 | 468 | -- | -- |
| 44.29 | 0.311 | 11.2 | 0.734 | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
| 47.65 | 0.323 | 11.2 | -- | 0.435 | -- | -- | -- | -0.312 | 15 | -- | -- | -- | -- |
| 56.57 | 0.35 | 11.2 | -- | -- | -0.32 | -- | -- | -0.277 | -- | 12.65 | 1083 | -- | -- |
| 58.52 | 0.357 | 11.2 | -- | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 3 | 26.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 15 |
| 38 | 26.20 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 50 | 26.25 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 73 | 26.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 88 | 26.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 89 | 26.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 109 | 26.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 135 | 26.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 158 | 26.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 211 | 26.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 217 | 26.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 246 | 26.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 280 | 26.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 304 | 26.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 326 | 26.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 337 | 26.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 342 | 26.62 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 352 | 26.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 361 | 26.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 404 | 26.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 446 | 26.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 448 | 26.69 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 494 | 26.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 515 | 26.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 527 | 26.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 547 | 26.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 571 | 26.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 670 | 26.79 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 713 | 26.81 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 714 | 26.81 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 720 | 26.81 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 721 | 26.81 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 722 | 26.81 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 743 | 26.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 762 | 26.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 769 | 26.83 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 783 | 26.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 795 | 26.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 797 | 26.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 826 | 26.85 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 866 | 26.87 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 892 | 26.88 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 916 | 26.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 960 | 26.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 994 | 26.92 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |