Os05g0591500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine synthase (EC 4.2.99.8).
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Os05g0591500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine synthase (EC 4.2.99.8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.76 | 0.527 | 8.1 | -1.09 | 1.81 | -2.71 | 0.826 | -2.21 | 0.169 | 6.73 | 26.66 | 12 | -- | -- |
| 133.75 | 0.543 | 8.13 | -1.42 | 1.78 | -2.54 | 0.804 | -- | 0.104 | 6.86 | 26.66 | 12 | -- | -- |
| 126.57 | 0.528 | 8.1 | -1.05 | 1.8 | -2.7 | -- | -2.24 | 0.176 | 6.71 | 26.6 | 12 | -- | -- |
| 135.28 | 0.545 | 8.14 | -1.41 | 1.79 | -2.57 | -- | -- | 0.0949 | 6.77 | 26.7 | 12 | -- | -- |
| 278.75 | 0.782 | 8.11 | -1.02 | -- | -2.7 | -- | -2.38 | 0.288 | -- | 24.79 | 2 | -- | -- |
| 229.73 | 0.711 | 8 | -0.839 | 1.72 | -- | 1.08 | -- | 0.663 | 8.4 | -- | -- | -- | -- |
| 233.38 | 0.715 | 8 | -0.807 | 1.72 | -- | -- | -- | 0.662 | 8.33 | -- | -- | -- | -- |
| 288.83 | 0.795 | 8.16 | -1.36 | -- | -2.51 | -- | -- | 0.204 | -- | 24.95 | 4 | -- | -- |
| 183.12 | 0.634 | 8.08 | -- | 1.74 | -2.03 | -- | -- | 0.357 | 7.13 | 26.7 | 12 | -- | -- |
| 398.32 | 0.933 | 8.05 | -0.796 | -- | -- | -- | -- | 0.68 | -- | -- | -- | -- | -- |
| 250.53 | 0.74 | 7.98 | -- | 1.72 | -- | -- | -- | 0.751 | 8.36 | -- | -- | -- | -- |
| 334.1 | 0.854 | 8.11 | -- | -- | -2.07 | -- | -- | 0.418 | -- | 25.1 | 4 | -- | -- |
| 415.03 | 0.951 | 8.03 | -- | -- | -- | -- | -- | 0.768 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 3 | 131.17 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 4 | 131.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 7 | 132.11 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 8 | 132.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 9 | 132.18 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 12 | 132.22 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 13 | 132.29 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 15 | 132.33 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 16 | 132.34 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 17 | 132.34 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 19 | 132.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 58 | 136.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 102 | 140.73 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 138 | 142.48 | temperature | 25 | 10 | < th | dose dependent | sin | 22 | NA |
| 235 | 147.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 239 | 147.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 257 | 148.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 299 | 149.70 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 345 | 151.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 475 | 154.92 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 487 | 155.14 | temperature | 10 | 10 | > th | dose dependent | sin | 6 | NA |
| 533 | 156.03 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 564 | 156.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 566 | 156.56 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 610 | 157.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 673 | 158.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 747 | 160.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 756 | 160.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 761 | 160.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 765 | 160.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 769 | 160.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 831 | 161.18 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 844 | 161.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 848 | 161.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 854 | 161.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 916 | 161.97 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 977 | 162.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 987 | 162.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 995 | 162.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |