FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0591400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein Hsp70 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.74 (0.0354) R2 : 1.83e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000682 (0.0746) R2dN8 : 2.37e-07 R2N8 : 1.83e-07
σ : 0.667
deviance : 204.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.27 0.651 2.75 -0.121 0.0551 1.21 0.787 -2.22 0.0616 17.2 0.0004447 295 -- --
195.5 0.651 2.74 -0.112 0.0338 1.11 1.01 -- 0.0726 16.6 9.949e-05 294 -- --
192.77 0.647 2.75 -0.133 0.145 1.24 -- -2.55 0.0724 21.3 0.0696 294 -- --
196.16 0.652 2.73 -0.0651 0.142 0.876 -- -- 0.0605 21.4 5.028e-07 294 -- --
193.84 0.648 2.75 -0.113 -- 1.14 -- -2.5 0.0577 -- 0.0644 294 -- --
202.15 0.667 2.74 0.0434 0.138 -- -0.632 -- -0.00127 3.52 -- -- -- --
203.33 0.668 2.74 0.0542 0.135 -- -- -- 0.00255 2.67 -- -- -- --
197.23 0.654 2.73 -0.0619 -- 0.799 -- -- 0.0537 -- 0.0544 294 -- --
196.28 0.653 2.73 -- 0.136 0.846 -- -- 0.0638 22 0.01773 294 -- --
204.4 0.668 2.74 0.06 -- -- -- -- 0.00597 -- -- -- -- --
203.41 0.667 2.74 -- 0.136 -- -- -- -0.00349 2.67 -- -- -- --
197.33 0.654 2.73 -- -- 0.778 -- -- 0.0588 -- 0.04658 294 -- --
204.49 0.667 2.74 -- -- -- -- -- -0.000682 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.90 humidity 70.0 10 < th dose independent rect. 7 1
61 177.90 humidity 70.0 10 < th dose dependent rect. 7 1
121 177.92 atmosphere 1000.0 10 < th dose independent rect. 7 1
128 177.92 atmosphere 1000.0 10 < th dose dependent rect. 7 1
136 177.95 wind 1.0 10 < th dose dependent rect. 7 1
138 177.99 wind 1.0 10 < th dose independent rect. 7 1
149 181.63 precipitation 0.1 10 > th dose independent rect. 7 11
153 181.63 precipitation 0.1 10 > th dose dependent rect. 7 11
157 181.89 humidity 90.0 10 > th dose independent rect. 17 1
160 181.89 precipitation 0.1 10 > th dose independent rect. 17 1
195 181.89 humidity 90.0 10 > th dose dependent rect. 17 1
198 181.89 precipitation 0.1 10 > th dose dependent rect. 17 1
268 187.19 radiation 30.0 10 > th dose independent rect. 7 2
336 188.43 wind 1.0 10 < th dose independent rect. 22 1
338 188.43 wind 1.0 10 < th dose dependent rect. 22 1
351 189.41 temperature 25.0 30 > th dose dependent rect. 5 1
356 190.18 wind 1.0 270 < th dose independent rect. 5 1
357 190.57 wind 1.0 270 < th dose independent rect. 2 1
363 190.89 atmosphere 1000.0 270 < th dose independent rect. 4 1
366 190.89 atmosphere 1000.0 270 < th dose dependent rect. 4 1
377 191.00 wind 1.0 270 < th dose dependent rect. 2 1
378 191.01 wind 1.0 270 < th dose independent rect. 2 4
380 191.03 radiation 1.0 90 < th dose independent rect. 16 1
395 191.34 temperature 25.0 10 > th dose independent rect. 5 4
402 191.43 humidity 90.0 10 > th dose dependent rect. 8 11
414 191.69 wind 1.0 270 < th dose dependent rect. 1 5
416 191.77 radiation 20.0 30 > th dose dependent rect. 7 2
465 192.33 wind 3.0 10 > th dose independent rect. 3 1
467 192.33 wind 3.0 10 > th dose dependent rect. 3 1
469 192.35 wind 5.0 90 > th dose independent rect. 3 1
471 192.35 wind 5.0 90 > th dose dependent rect. 3 1
494 192.55 radiation 1.0 270 > th dose dependent rect. 18 12
557 192.76 humidity 90.0 270 > th dose independent rect. 14 1
558 192.76 humidity 90.0 270 > th dose dependent rect. 14 1
588 192.86 temperature 25.0 90 < th dose independent rect. 16 1
611 193.01 radiation 10.0 270 < th dose dependent rect. 14 1
614 193.03 radiation 1.0 270 > th dose dependent rect. 5 1
639 193.25 temperature 20.0 10 > th dose dependent rect. 2 4
697 193.44 wind 1.0 270 < th dose dependent rect. 5 1
705 193.53 radiation 1.0 90 < th dose independent rect. 7 11
709 193.54 temperature 25.0 10 > th dose independent rect. 5 1
721 193.59 wind 1.0 270 < th dose dependent rect. 1 20
725 193.62 wind 1.0 270 < th dose dependent rect. 1 14
728 193.64 wind 1.0 270 > th dose independent sin 8 NA
729 193.64 wind 1.0 270 < th dose dependent rect. 1 18
751 193.67 wind 1.0 270 < th dose dependent rect. 11 19
759 193.69 wind 1.0 270 < th dose dependent rect. 14 17
762 193.72 wind 1.0 270 < th dose dependent rect. 18 13
765 193.73 wind 1.0 270 < th dose dependent rect. 20 11
784 193.83 radiation 10.0 270 < th dose independent rect. 14 2
826 194.10 radiation 1.0 90 < th dose independent rect. 9 8
843 194.14 wind 1.0 270 < th dose dependent sin 10 NA
862 194.21 wind 1.0 270 < th dose independent rect. 1 14
866 194.22 wind 1.0 270 < th dose independent rect. 1 20
874 194.24 temperature 25.0 90 < th dose dependent rect. 16 1
880 194.26 wind 1.0 270 < th dose independent rect. 1 18
900 194.31 temperature 25.0 30 > th dose dependent rect. 5 3
922 194.35 temperature 20.0 270 > th dose dependent rect. 2 1
944 194.38 humidity 90.0 10 > th dose independent rect. 8 11
962 194.46 wind 1.0 270 < th dose independent rect. 14 16
978 194.51 wind 1.0 270 < th dose independent rect. 18 12
993 194.54 wind 1.0 270 < th dose independent rect. 20 10