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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0591300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase beta subunit) (RNA polymerase beta subunit).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0312) R2 : 9.74e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0139 (0.0658) R2dN8 : 0.000126 R2N8 : 9.74e-05
σ : 0.588
deviance : 158.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.57 0.584 2.92 -0.0956 0.0738 0.412 0.0624 -0.699 0.0674 13 90.89 285 -- --
155.08 0.58 2.92 -0.145 0.103 0.412 0.42 -- 0.0674 15.6 90.02 279 -- --
154.57 0.579 2.93 -0.092 0.0747 0.404 -- -0.736 0.0661 12.4 91 279 -- --
155.41 0.581 2.92 -0.114 0.0804 0.369 -- -- 0.058 12.8 90.65 279 -- --
154.88 0.58 2.93 -0.0897 -- 0.388 -- -0.749 0.0637 -- 91 293 -- --
157.5 0.588 2.93 -0.0751 0.14 -- -0.257 -- 0.002 6.82 -- -- -- --
157.66 0.588 2.93 -0.0789 0.14 -- -- -- 0.00299 7.26 -- -- -- --
155.77 0.581 2.92 -0.114 -- 0.348 -- -- 0.0523 -- 90.87 292 -- --
155.76 0.581 2.92 -- 0.0778 0.352 -- -- 0.0685 12.5 90.77 279 -- --
158.69 0.589 2.93 -0.0765 -- -- -- -- 0.00538 -- -- -- -- --
157.82 0.588 2.93 -- 0.139 -- -- -- 0.0118 7.29 -- -- -- --
156.1 0.582 2.92 -- -- 0.337 -- -- 0.0649 -- 90.96 292 -- --
158.84 0.588 2.93 -- -- -- -- -- 0.0139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.28 wind 3.0 270 > th dose dependent rect. 6 1
2 145.36 temperature 25.0 30 > th dose dependent rect. 5 1
4 146.45 wind 7.0 90 > th dose independent rect. 7 2
17 148.16 wind 5.0 10 > th dose independent rect. 10 1
21 148.16 wind 5.0 10 > th dose dependent rect. 10 1
26 148.31 humidity 90.0 90 > th dose dependent rect. 8 1
44 148.42 humidity 90.0 90 > th dose independent rect. 8 1
48 148.77 temperature 25.0 10 > th dose independent rect. 5 1
79 149.51 wind 9.0 90 > th dose dependent rect. 21 13
80 149.51 wind 9.0 90 > th dose dependent rect. 19 15
98 150.06 humidity 90.0 90 > th dose dependent rect. 5 1
99 150.08 radiation 30.0 10 > th dose dependent rect. 13 1
103 150.30 radiation 30.0 10 > th dose independent rect. 13 1
131 150.91 humidity 90.0 90 > th dose independent rect. 5 2
135 150.95 radiation 1.0 90 > th dose dependent rect. 5 1
140 151.02 radiation 1.0 10 > th dose dependent rect. 5 1
183 151.20 humidity 90.0 30 > th dose dependent rect. 4 17
189 151.30 humidity 90.0 90 > th dose dependent rect. 4 5
232 151.45 temperature 25.0 720 < th dose dependent rect. 11 3
237 151.52 temperature 25.0 720 < th dose dependent rect. 12 1
242 151.54 humidity 90.0 270 > th dose dependent rect. 2 5
275 151.62 wind 7.0 720 < th dose independent rect. 24 9
284 151.73 humidity 70.0 90 < th dose dependent rect. 12 1
301 151.87 humidity 90.0 270 > th dose independent rect. 2 6
306 151.91 atmosphere 1005.0 10 < th dose dependent rect. 5 1
316 151.97 humidity 90.0 90 > th dose independent rect. 4 5
354 152.15 wind 7.0 1440 > th dose independent rect. 2 7
357 152.16 radiation 40.0 30 > th dose independent sin 13 NA
400 152.31 wind 7.0 1440 > th dose dependent rect. 2 7
466 152.44 radiation 40.0 10 < th dose independent sin 13 NA
472 152.48 wind 7.0 1440 < th dose independent rect. 2 7
476 152.49 humidity 70.0 90 < th dose independent rect. 12 2
506 152.59 radiation 40.0 30 < th dose independent rect. 11 17
516 152.64 wind 7.0 1440 > th dose dependent rect. 7 2
557 152.74 wind 1.0 720 > th dose independent rect. 12 9
564 152.76 temperature 20.0 90 < th dose dependent rect. 7 13
576 152.80 wind 3.0 90 < th dose independent rect. 5 1
584 152.85 humidity 90.0 270 > th dose dependent rect. 2 18
588 152.87 wind 1.0 270 < th dose dependent rect. 4 1
591 152.88 wind 5.0 90 < th dose dependent rect. 5 1
601 152.90 temperature 25.0 720 < th dose independent rect. 13 1
602 152.90 wind 7.0 1440 > th dose independent rect. 7 2
639 152.95 humidity 90.0 270 > th dose dependent rect. 2 16
640 152.96 temperature 20.0 90 < th dose independent rect. 7 12
641 152.96 humidity 50.0 720 > th dose independent rect. 21 15
642 152.97 atmosphere 1005.0 270 > th dose dependent rect. 11 9
644 152.97 radiation 40.0 90 < th dose dependent rect. 10 18
645 152.98 temperature 25.0 30 > th dose independent rect. 9 1
646 152.98 humidity 90.0 270 < th dose independent rect. 24 9
655 153.00 radiation 10.0 90 < th dose dependent rect. 5 4
669 153.03 radiation 10.0 90 < th dose independent rect. 5 1
670 153.03 humidity 50.0 720 > th dose independent rect. 6 6
675 153.05 wind 1.0 720 > th dose independent rect. 24 1
688 153.07 temperature 20.0 270 < th dose independent rect. 19 1
689 153.07 atmosphere 1000.0 90 > th dose independent rect. 5 1
698 153.09 radiation 10.0 720 < th dose independent rect. 18 6
727 153.18 temperature 20.0 90 < th dose independent rect. 6 15
738 153.21 atmosphere 995.0 720 > th dose independent rect. 18 6
745 153.22 wind 7.0 1440 < th dose independent rect. 7 2
746 153.22 wind 5.0 720 < th dose independent rect. 24 2
747 153.22 radiation 40.0 30 > th dose dependent sin 13 NA
748 153.22 temperature 10.0 90 > th dose dependent rect. 5 1
751 153.23 wind 3.0 1440 > th dose independent rect. 2 1
752 153.23 wind 3.0 1440 < th dose independent rect. 2 1
756 153.24 wind 3.0 1440 > th dose independent rect. 1 6
759 153.24 atmosphere 1015.0 90 < th dose dependent rect. 5 1
768 153.26 humidity 70.0 720 > th dose dependent rect. 3 3
778 153.28 atmosphere 1000.0 720 > th dose independent rect. 22 8
787 153.29 temperature 25.0 90 < th dose dependent sin 21 NA
791 153.30 radiation 10.0 720 < th dose dependent rect. 18 6
793 153.31 wind 9.0 90 > th dose independent rect. 13 2
795 153.31 wind 3.0 1440 < th dose independent rect. 1 6
796 153.31 wind 9.0 90 > th dose dependent rect. 13 2
799 153.32 wind 9.0 10 > th dose independent rect. 13 1
811 153.32 wind 9.0 10 > th dose dependent rect. 13 1
827 153.33 precipitation 0.1 720 < th dose independent rect. 9 15
830 153.33 precipitation 0.1 720 < th dose dependent rect. 9 15
833 153.34 wind 9.0 1440 < th dose dependent rect. 2 1
836 153.34 humidity 80.0 1440 < th dose dependent rect. 18 15
838 153.35 radiation 40.0 90 < th dose independent rect. 7 21
839 153.35 wind 1.0 1440 > th dose dependent rect. 2 1
846 153.36 temperature 25.0 90 < th dose independent rect. 4 3
847 153.36 humidity 60.0 720 > th dose independent rect. 24 9
848 153.36 atmosphere 1015.0 720 < th dose independent rect. 12 9
850 153.37 wind 1.0 90 > th dose independent rect. 24 12
864 153.39 precipitation 0.1 720 < th dose independent rect. 12 9
868 153.39 precipitation 0.1 720 < th dose dependent rect. 12 9
881 153.42 temperature 10.0 720 > th dose independent rect. 18 6
882 153.42 humidity 50.0 720 > th dose independent rect. 18 6
886 153.42 temperature 10.0 720 > th dose independent rect. 24 18
891 153.43 temperature 25.0 90 < th dose independent rect. 5 1
899 153.44 wind 1.0 10 > th dose independent rect. 5 1
905 153.45 wind 9.0 720 < th dose independent rect. 18 6
907 153.45 temperature 20.0 90 < th dose independent rect. 6 17
923 153.48 precipitation 0.1 90 < th dose independent rect. 5 1
926 153.48 precipitation 0.1 90 < th dose dependent rect. 5 1
927 153.49 temperature 10.0 720 > th dose independent rect. 6 6
928 153.49 atmosphere 995.0 720 > th dose independent rect. 6 6
929 153.49 atmosphere 1015.0 720 < th dose independent rect. 6 6
931 153.49 wind 9.0 720 < th dose independent rect. 12 18
932 153.49 temperature 10.0 720 > th dose independent rect. 12 18
939 153.50 temperature 10.0 90 > th dose independent rect. 5 1
942 153.50 humidity 50.0 90 > th dose independent rect. 5 1
946 153.50 atmosphere 1010.0 90 < th dose independent rect. 5 1
953 153.50 temperature 10.0 90 > th dose independent rect. 6 23
964 153.51 radiation 10.0 90 < th dose independent rect. 4 5
970 153.51 wind 3.0 1440 > th dose dependent rect. 1 6
977 153.53 precipitation 0.1 720 < th dose independent rect. 24 9
981 153.53 precipitation 0.1 720 < th dose dependent rect. 24 9
985 153.54 atmosphere 995.0 720 > th dose independent rect. 18 16
986 153.54 humidity 90.0 270 > th dose dependent sin 6 NA
987 153.54 radiation 40.0 90 < th dose dependent rect. 5 1