Os05g0590000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os05g0590000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.65 | 0.662 | 5.5 | 1.42 | 1.03 | -1.64 | 0.348 | -1.11 | 0.0701 | 1.14 | 21.4 | 1323 | -- | -- |
| 197.29 | 0.654 | 5.47 | 1.57 | 1.14 | -1.37 | 0.36 | -- | 0.143 | 0.864 | 22.01 | 1037 | -- | -- |
| 199.15 | 0.657 | 5.5 | 1.42 | 1.03 | -1.64 | -- | -1.06 | 0.0707 | 1.16 | 21.4 | 1325 | -- | -- |
| 197.83 | 0.655 | 5.47 | 1.54 | 1.14 | -1.37 | -- | -- | 0.144 | 0.836 | 22 | 1037 | -- | -- |
| 248.64 | 0.738 | 5.51 | 1.14 | -- | -1.09 | -- | -0.935 | -0.0568 | -- | 21.76 | 1685 | -- | -- |
| 270.17 | 0.771 | 5.57 | 1.06 | 0.936 | -- | 0.42 | -- | -0.301 | 1.09 | -- | -- | -- | -- |
| 270.9 | 0.771 | 5.57 | 1.05 | 0.935 | -- | -- | -- | -0.303 | 1.1 | -- | -- | -- | -- |
| 249.07 | 0.738 | 5.49 | 1.35 | -- | -1.08 | -- | -- | 0.0176 | -- | 22 | 1037 | -- | -- |
| 252.99 | 0.741 | 5.53 | -- | 1.12 | -1 | -- | -- | -0.111 | 0.894 | 22.37 | 974 | -- | -- |
| 325.17 | 0.843 | 5.55 | 1.08 | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
| 299.68 | 0.81 | 5.59 | -- | 0.953 | -- | -- | -- | -0.419 | 1.14 | -- | -- | -- | -- |
| 296.07 | 0.804 | 5.52 | -- | -- | -0.934 | -- | -- | -0.155 | -- | 22.4 | 1617 | -- | -- |
| 355.98 | 0.881 | 5.58 | -- | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 10 | 200.65 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 13 | 200.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 15 | 200.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 21 | 200.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 22 | 200.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 66 | 201.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 76 | 201.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 79 | 201.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 127 | 201.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 159 | 202.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 162 | 202.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 176 | 202.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 280 | 203.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 307 | 203.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 335 | 203.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 341 | 203.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 419 | 204.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 437 | 204.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 447 | 204.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 456 | 204.20 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 571 | 204.72 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 591 | 204.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 637 | 205.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 663 | 205.29 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 711 | 205.49 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 916 | 206.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |