Os05g0589500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0589500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.51 | 0.767 | 3.65 | -1.92 | 0.0203 | 1.28 | 0.764 | -1.2 | -0.346 | 10.8 | 20 | 5962 | -- | -- |
| 268.96 | 0.764 | 3.68 | -2.08 | 0.0206 | 1.54 | 0.859 | -- | -0.335 | 10.7 | 20.3 | 5954 | -- | -- |
| 268.46 | 0.763 | 3.66 | -1.93 | 0.0714 | 1.19 | -- | -1.3 | -0.365 | 5.55 | 20 | 5962 | -- | -- |
| 269.83 | 0.765 | 3.7 | -2 | 0.127 | 1.59 | -- | -- | -0.364 | 5.65 | 19.9 | 5907 | -- | -- |
| 268.99 | 0.764 | 3.66 | -1.9 | -- | 1.29 | -- | -1.16 | -0.352 | -- | 20 | 5969 | -- | -- |
| 309.19 | 0.824 | 3.81 | -3.14 | 0.0277 | -- | 0.888 | -- | -0.836 | 10.6 | -- | -- | -- | -- |
| 311.89 | 0.827 | 3.81 | -3.11 | 0.107 | -- | -- | -- | -0.836 | 5.66 | -- | -- | -- | -- |
| 270.62 | 0.766 | 3.7 | -2.02 | -- | 1.57 | -- | -- | -0.368 | -- | 20 | 5960 | -- | -- |
| 281.53 | 0.781 | 3.59 | -- | 0.129 | 2.73 | -- | -- | 0.121 | 5.55 | 18.2 | 47520 | -- | -- |
| 312.49 | 0.826 | 3.81 | -3.11 | -- | -- | -- | -- | -0.833 | -- | -- | -- | -- | -- |
| 566.92 | 1.11 | 3.73 | -- | 0.0675 | -- | -- | -- | -0.489 | 7.82 | -- | -- | -- | -- |
| 282.29 | 0.783 | 3.59 | -- | -- | 2.72 | -- | -- | 0.139 | -- | 18.13 | 47520 | -- | -- |
| 567.17 | 1.11 | 3.73 | -- | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.97 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 2 | 247.16 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 3 | 247.43 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 8 | 247.93 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 10 | 248.08 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 13 | 248.47 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 15 | 248.51 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 23 | 249.13 | wind | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 27 | 249.38 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 19 |
| 32 | 249.48 | wind | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 59 | 250.46 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 154 | 253.32 | wind | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 167 | 253.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 192 | 254.01 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 20 |
| 199 | 254.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 23 |
| 226 | 254.65 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 255 | 255.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 261 | 255.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 279 | 255.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 286 | 256.01 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 292 | 256.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 15 | 17 |
| 333 | 256.52 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 389 | 257.42 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 16 |
| 412 | 257.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 14 |
| 450 | 258.07 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 480 | 258.36 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 501 | 258.49 | wind | 1 | 43200 | < th | dose independent | no | NA | NA |
| 509 | 258.55 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 535 | 258.72 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 552 | 258.79 | wind | 1 | 43200 | > th | dose independent | no | NA | NA |
| 571 | 258.90 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 589 | 259.14 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 642 | 259.44 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 15 |
| 704 | 259.75 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 764 | 260.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 775 | 260.33 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 809 | 260.54 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 861 | 260.91 | temperature | 20 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 870 | 260.94 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 882 | 261.00 | temperature | 20 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 889 | 261.07 | wind | 1 | 14400 | < th | dose dependent | sin | 4 | NA |
| 895 | 261.11 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 966 | 261.72 | temperature | 15 | 14400 | < th | dose independent | rect. | 8 | 2 |