Os05g0588800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
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Os05g0588800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.66 | 0.432 | 7.71 | 1.13 | 1.08 | -0.947 | -0.58 | 2.83 | 0.685 | 23.1 | 25.54 | 1302 | -- | -- |
| 86.35 | 0.433 | 7.82 | 0.408 | 1.09 | -0.656 | -0.421 | -- | 0.435 | 22.9 | 28.13 | 2554 | -- | -- |
| 86.03 | 0.432 | 7.71 | 1.15 | 1.06 | -0.925 | -- | 2.8 | 0.66 | 23.1 | 25.99 | 1336 | -- | -- |
| 87.07 | 0.435 | 7.82 | 0.396 | 1.09 | -0.696 | -- | -- | 0.416 | 23 | 27.84 | 2521 | -- | -- |
| 142.38 | 0.559 | 7.73 | 0.761 | -- | -1.27 | -- | 4.44 | 0.589 | -- | 25.99 | 1336 | -- | -- |
| 104.3 | 0.479 | 7.81 | 0.174 | 0.997 | -- | -0.585 | -- | 0.449 | 22.9 | -- | -- | -- | -- |
| 105.74 | 0.482 | 7.81 | 0.198 | 1 | -- | -- | -- | 0.451 | 22.9 | -- | -- | -- | -- |
| 141.63 | 0.557 | 7.75 | 0.398 | -- | -1.02 | -- | -- | 0.602 | -- | 22.8 | 4559 | -- | -- |
| 90.9 | 0.444 | 7.84 | -- | 1.07 | -0.618 | -- | -- | 0.354 | 23 | 28.7 | 2553 | -- | -- |
| 167.77 | 0.605 | 7.79 | 0.219 | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
| 106.77 | 0.483 | 7.82 | -- | 1 | -- | -- | -- | 0.429 | 22.9 | -- | -- | -- | -- |
| 145.67 | 0.564 | 7.76 | -- | -- | -0.951 | -- | -- | 0.549 | -- | 22.8 | 4559 | -- | -- |
| 169.03 | 0.607 | 7.79 | -- | -- | -- | -- | -- | 0.433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 11 | 80.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 12 | 80.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 25 | 81.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 32 | 81.77 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 39 | 81.95 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 41 | 82.01 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 49 | 82.27 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 52 | 82.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 66 | 82.70 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 75 | 82.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 79 | 82.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 83 | 82.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 90 | 83.00 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 98 | 83.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 138 | 83.32 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 156 | 83.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 159 | 83.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 163 | 83.43 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 15 |
| 173 | 83.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 220 | 83.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 271 | 83.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 288 | 83.69 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 290 | 83.70 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 327 | 83.76 | wind | 3 | 43200 | > th | dose dependent | sin | 0 | NA |
| 341 | 83.79 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 371 | 83.83 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 422 | 83.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 446 | 84.01 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 490 | 84.09 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 504 | 84.11 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 515 | 84.13 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 525 | 84.14 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 549 | 84.18 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 564 | 84.21 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 597 | 84.25 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 628 | 84.30 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 648 | 84.32 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 675 | 84.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 686 | 84.38 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 699 | 84.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 701 | 84.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 706 | 84.40 | atmosphere | 995 | 43200 | > th | dose independent | sin | 22 | NA |
| 707 | 84.40 | atmosphere | 995 | 43200 | < th | dose independent | sin | 22 | NA |
| 736 | 84.42 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 22 |
| 739 | 84.43 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 773 | 84.48 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 811 | 84.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 846 | 84.55 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 9 |
| 985 | 84.68 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |