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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0588700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone deacetylase interacting domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0328) R2 : 0.589
β1 : 2.76 (0.124) R2dD : 0.493 R2D : 0.189
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.972 (0.092) R2dE : 0.107 R2E : -0.0716
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.1 (0.0702) R2dN8 : 0.295 R2N8 : 0.1
σ : 0.614
deviance : 174.01
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.4
memory length : 1335
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.21 0.593 4.09 3.21 0.486 -1.15 0.89 1.7 1.21 19.1 26.17 1284 -- --
160.15 0.589 4.14 2.78 0.516 -0.99 0.825 -- 1.16 19.3 26.05 1258 -- --
160.87 0.591 4.09 3.22 0.499 -1.2 -- 1.78 1.24 19.8 25.94 1264 -- --
161.64 0.592 4.15 2.77 0.49 -1.01 -- -- 1.11 19.7 26.3 1265 -- --
173.52 0.614 4.08 3.2 -- -1.16 -- 1.65 1.22 -- 26.09 1324 -- --
199.02 0.661 4.16 2.46 0.492 -- 1.36 -- 1.07 17.8 -- -- -- --
203.07 0.667 4.16 2.45 0.507 -- -- -- 1.07 18.5 -- -- -- --
174.01 0.614 4.14 2.76 -- -0.972 -- -- 1.1 -- 26.4 1335 -- --
348.97 0.87 4.23 -- 0.473 -0.501 -- -- 0.724 19.6 28.77 1240 -- --
216.45 0.687 4.15 2.44 -- -- -- -- 1.06 -- -- -- -- --
361.06 0.889 4.22 -- 0.477 -- -- -- 0.797 18.8 -- -- -- --
360.07 0.884 4.23 -- -- -0.494 -- -- 0.683 -- 32.06 1365 -- --
372.94 0.901 4.21 -- -- -- -- -- 0.789 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.97 humidity 70.0 14400 < th dose independent rect. 18 13
2 149.10 humidity 70.0 14400 < th dose independent rect. 18 4
13 149.36 wind 3.0 43200 < th dose dependent rect. 1 4
14 149.41 humidity 70.0 14400 > th dose independent rect. 19 13
15 149.86 humidity 70.0 14400 > th dose independent rect. 19 1
17 150.06 humidity 70.0 14400 > th dose independent rect. 19 8
18 150.06 precipitation 0.1 43200 > th dose dependent rect. 19 2
19 150.07 humidity 70.0 14400 > th dose independent rect. 19 6
48 150.91 humidity 80.0 14400 > th dose independent rect. 15 5
66 151.46 humidity 80.0 14400 < th dose independent rect. 16 3
69 151.76 humidity 70.0 14400 < th dose dependent rect. 18 1
82 152.22 wind 3.0 43200 < th dose independent rect. 3 2
91 152.57 wind 1.0 43200 > th dose dependent rect. 3 7
93 152.64 wind 3.0 43200 > th dose independent rect. 3 1
107 152.92 wind 1.0 43200 > th dose dependent rect. 24 10
108 152.96 wind 9.0 43200 < th dose dependent rect. 3 7
110 153.03 wind 1.0 43200 > th dose dependent rect. 3 10
111 153.05 wind 5.0 43200 < th dose dependent rect. 3 7
112 153.09 wind 3.0 43200 < th dose independent rect. 3 6
118 153.13 wind 7.0 43200 < th dose dependent rect. 3 10
123 153.18 wind 3.0 43200 > th dose independent rect. 3 6
126 153.23 wind 9.0 43200 < th dose dependent rect. 24 10
130 153.29 wind 1.0 43200 > th dose dependent rect. 24 13
134 153.32 humidity 60.0 14400 < th dose dependent rect. 16 2
140 153.36 precipitation 0.1 43200 < th dose independent rect. 16 2
141 153.36 precipitation 0.1 43200 < th dose dependent rect. 16 2
143 153.37 wind 3.0 43200 > th dose dependent rect. 5 2
149 153.40 precipitation 0.1 43200 > th dose independent rect. 16 2
153 153.41 humidity 70.0 14400 < th dose dependent rect. 18 13
159 153.47 wind 7.0 43200 < th dose dependent rect. 24 13
175 153.59 humidity 70.0 14400 < th dose dependent rect. 18 4
208 153.73 precipitation 0.1 43200 > th dose dependent rect. 16 5
215 153.77 humidity 60.0 14400 < th dose dependent rect. 16 16
236 153.84 humidity 60.0 14400 < th dose dependent rect. 16 5
250 153.85 radiation 40.0 4320 < th dose dependent rect. 18 9
264 153.95 humidity 90.0 43200 > th dose independent rect. 9 1
266 153.95 radiation 1.0 4320 < th dose independent rect. 18 11
278 153.98 radiation 1.0 4320 < th dose independent rect. 18 9
286 154.05 radiation 1.0 4320 < th dose independent rect. 18 7
291 154.08 humidity 80.0 14400 > th dose dependent rect. 21 2
305 154.18 radiation 1.0 4320 < th dose independent rect. 18 2
329 154.35 humidity 80.0 14400 > th dose dependent rect. 18 6
334 154.37 humidity 80.0 14400 < th dose dependent rect. 16 6
363 154.47 radiation 1.0 4320 > th dose independent rect. 18 11
366 154.50 wind 5.0 43200 < th dose independent rect. 6 1
371 154.52 radiation 30.0 4320 < th dose independent sin 12 NA
372 154.52 wind 1.0 43200 < th dose independent rect. 1 2
394 154.62 wind 1.0 43200 > th dose dependent sin 6 NA
407 154.63 radiation 20.0 14400 < th dose independent rect. 16 15
408 154.63 radiation 30.0 4320 < th dose independent rect. 14 20
415 154.65 radiation 1.0 4320 > th dose independent rect. 18 1
449 154.76 radiation 20.0 14400 < th dose independent rect. 16 11
452 154.77 radiation 20.0 14400 < th dose independent rect. 16 9
454 154.78 radiation 20.0 14400 < th dose independent rect. 16 2
455 154.78 radiation 20.0 14400 < th dose independent rect. 16 4
476 154.83 radiation 30.0 4320 > th dose dependent rect. 14 19
481 154.84 radiation 30.0 4320 > th dose dependent rect. 13 21
500 154.90 wind 9.0 43200 < th dose dependent sin 6 NA
507 154.95 humidity 70.0 14400 < th dose independent rect. 15 16
543 155.05 radiation 20.0 14400 > th dose dependent rect. 16 15
556 155.07 humidity 70.0 14400 < th dose independent sin 14 NA
570 155.10 wind 5.0 43200 > th dose independent rect. 6 1
639 155.34 radiation 30.0 4320 < th dose dependent rect. 18 7
653 155.39 precipitation 0.1 43200 > th dose independent rect. 19 2
655 155.39 humidity 50.0 14400 > th dose dependent rect. 18 1
661 155.41 wind 3.0 43200 < th dose independent rect. 24 9
664 155.42 precipitation 0.1 43200 < th dose independent rect. 19 2
667 155.42 precipitation 0.1 43200 < th dose dependent rect. 19 2
694 155.52 humidity 70.0 14400 > th dose independent sin 14 NA
695 155.52 radiation 20.0 14400 > th dose dependent rect. 16 1
770 155.70 radiation 30.0 4320 > th dose dependent sin 12 NA
781 155.72 precipitation 0.1 43200 > th dose dependent rect. 11 7
820 155.83 humidity 60.0 14400 > th dose dependent rect. 14 12
849 155.91 humidity 60.0 14400 > th dose dependent rect. 14 1
858 155.94 humidity 80.0 14400 > th dose independent sin 18 NA
870 155.96 temperature 30.0 14400 > th dose independent rect. 14 3
871 155.96 temperature 30.0 14400 < th dose independent rect. 14 3
873 155.96 temperature 30.0 14400 < th dose independent rect. 14 11
874 155.96 temperature 30.0 14400 < th dose independent rect. 14 13
883 155.97 temperature 30.0 14400 < th dose independent rect. 14 18
886 155.98 temperature 30.0 14400 < th dose independent rect. 14 5
913 155.99 wind 9.0 43200 > th dose dependent rect. 19 10
929 156.01 temperature 30.0 14400 > th dose independent rect. 14 5