Os05g0588300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os05g0588300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.72 | 0.417 | 12.3 | -0.913 | 1.55 | -0.544 | 0.892 | -1.08 | -0.474 | 9.69 | 70.89 | 818 | -- | -- |
| 80.24 | 0.417 | 12.3 | -1.02 | 1.58 | -0.558 | 0.74 | -- | -0.463 | 9.65 | 70 | 797 | -- | -- |
| 80.86 | 0.419 | 12.3 | -0.924 | 1.54 | -0.551 | -- | -0.392 | -0.475 | 9.7 | 69 | 806 | -- | -- |
| 81.06 | 0.419 | 12.3 | -0.963 | 1.54 | -0.561 | -- | -- | -0.476 | 9.69 | 69.98 | 799 | -- | -- |
| 152.36 | 0.575 | 12.3 | -0.988 | -- | 1.01 | -- | -0.223 | -0.346 | -- | 90 | 778 | -- | -- |
| 87.05 | 0.437 | 12.3 | -0.905 | 1.29 | -- | 0.47 | -- | -0.467 | 9.98 | -- | -- | -- | -- |
| 87.91 | 0.439 | 12.3 | -0.887 | 1.29 | -- | -- | -- | -0.466 | 9.97 | -- | -- | -- | -- |
| 152.49 | 0.575 | 12.3 | -1.03 | -- | 1.05 | -- | -- | -0.331 | -- | 89.89 | 778 | -- | -- |
| 100.32 | 0.466 | 12.3 | -- | 1.35 | -0.723 | -- | -- | -0.404 | 9.95 | 65.68 | 7933 | -- | -- |
| 187.24 | 0.639 | 12.3 | -0.902 | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
| 108.65 | 0.488 | 12.3 | -- | 1.29 | -- | -- | -- | -0.368 | 10 | -- | -- | -- | -- |
| 180.48 | 0.626 | 12.3 | -- | -- | 0.897 | -- | -- | -0.265 | -- | 88 | 766 | -- | -- |
| 208.71 | 0.674 | 12.3 | -- | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.22 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 2 | 75.02 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 6 | 75.77 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 11 |
| 23 | 77.22 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 24 | 77.44 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 19 |
| 25 | 77.44 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 77.47 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 45 | 77.83 | humidity | 70.0 | 720 | > th | dose independent | rect. | 7 | 20 |
| 91 | 78.17 | humidity | 70.0 | 720 | < th | dose independent | sin | 16 | NA |
| 121 | 78.26 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 15 | 4 |
| 122 | 78.27 | humidity | 70.0 | 720 | > th | dose independent | rect. | 7 | 13 |
| 124 | 78.27 | humidity | 70.0 | 720 | < th | dose independent | rect. | 12 | 20 |
| 125 | 78.27 | humidity | 70.0 | 720 | > th | dose independent | rect. | 23 | 21 |
| 126 | 78.28 | humidity | 70.0 | 720 | < th | dose independent | rect. | 12 | 8 |
| 140 | 78.32 | humidity | 70.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 154 | 78.44 | humidity | 70.0 | 720 | > th | dose independent | sin | 16 | NA |
| 157 | 78.46 | humidity | 70.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 234 | 78.66 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 238 | 78.68 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 241 | 78.69 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 244 | 78.70 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 298 | 78.80 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 313 | 78.87 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 317 | 78.90 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 329 | 78.93 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 339 | 78.97 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 16 | 2 |
| 367 | 79.00 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 9 | 11 |
| 377 | 79.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 378 | 79.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 395 | 79.08 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 402 | 79.11 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 406 | 79.12 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 407 | 79.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 417 | 79.16 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 424 | 79.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 433 | 79.17 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 12 |
| 455 | 79.19 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 472 | 79.22 | humidity | 60.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 519 | 79.35 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 530 | 79.37 | humidity | 70.0 | 720 | > th | dose independent | no | NA | NA |
| 562 | 79.40 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 623 | 79.46 | humidity | 70.0 | 720 | < th | dose independent | no | NA | NA |
| 625 | 79.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 626 | 79.46 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 699 | 79.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 720 | 79.49 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 757 | 79.53 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 764 | 79.54 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 778 | 79.55 | humidity | 60.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 783 | 79.55 | humidity | 90.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 797 | 79.56 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 802 | 79.56 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 815 | 79.57 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 865 | 79.60 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 875 | 79.60 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 22 |