FiT-DB / Search/ Help/ Sample detail

Os05g0587600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0329) R2 : 0.749
β1 : -1.53 (0.121) R2dD : 0.095 R2D : -0.00679
β2 : 1.85 (0.092) R2dC : 0.273 R2C : 0.436
β3 : 2.33 (0.151) R2dE : 0.162 R2E : 0.286
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.896 (0.07) R2dN8 : 0.113 R2N8 : 0.063
σ : 0.613
deviance : 173.46
__
_____
C
peak time of C : 20.3
E
wheather : temperature
threshold : -2.532
memory length : 130
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.97
open length of G : 21.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.79 0.616 10.5 -1.45 2.02 2.25 -1.25 2.52 -0.882 20.3 5.742 91 7.15 22.1
173.83 0.614 10.5 -1.5 1.93 2.18 -0.964 -- -0.889 20.2 1.718 92 7.14 22
174.03 0.614 10.5 -1.5 1.91 2.29 -- 1.61 -0.909 20.4 3.408 121 7.02 21.7
173.46 0.613 10.5 -1.53 1.85 2.33 -- -- -0.896 20.3 -2.532 130 6.97 21.7
212.92 0.68 10.6 -1.44 -- 3.06 -- -0.11 -1.17 -- -2.946 476 6.38 18
236.69 0.721 10.5 -1.32 2.6 -- -1.3 -- -0.858 19.4 -- -- -- --
241.29 0.727 10.5 -1.29 2.59 -- -- -- -0.861 19.4 -- -- -- --
199.49 0.658 10.5 -1.52 -- 3.23 -- -- -0.987 -- -18.19 449 6.72 18
233.62 0.712 10.5 -- 2.02 1.97 -- -- -0.698 20 -4.754 123 7.02 21.7
599.75 1.14 10.5 -1.33 -- -- -- -- -0.903 -- -- -- -- --
284.96 0.79 10.5 -- 2.61 -- -- -- -0.718 19.4 -- -- -- --
249.02 0.735 10.4 -- -- 2.93 -- -- -0.653 -- -85.05 443 7.03 17.3
646.34 1.19 10.4 -- -- -- -- -- -0.756 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.85 temperature 10.0 90 > th dose dependent rect. 7 22
4 180.63 temperature 30.0 90 < th dose dependent rect. 5 6
5 180.67 temperature 30.0 90 < th dose dependent rect. 5 12
6 181.00 temperature 30.0 90 < th dose dependent rect. 5 8
7 181.21 temperature 30.0 90 < th dose dependent rect. 5 16
8 181.61 temperature 10.0 270 > th dose dependent rect. 22 13
9 181.65 temperature 30.0 90 < th dose dependent rect. 5 10
19 183.13 wind 9.0 90 < th dose independent rect. 7 22
26 183.79 wind 7.0 90 < th dose independent rect. 5 2
28 183.79 temperature 10.0 90 > th dose independent rect. 5 2
30 183.79 temperature 30.0 90 < th dose independent rect. 5 2
31 183.79 humidity 50.0 90 > th dose independent rect. 5 2
33 183.79 atmosphere 995.0 90 > th dose independent rect. 5 2
34 183.79 atmosphere 1015.0 90 < th dose independent rect. 5 2
35 183.79 radiation 40.0 90 < th dose independent rect. 5 2
36 183.79 temperature 10.0 90 > th dose independent rect. 7 22
39 183.93 precipitation 0.1 90 < th dose independent rect. 5 2
40 183.93 precipitation 0.1 90 < th dose dependent rect. 5 2
48 184.30 precipitation 0.1 90 < th dose independent rect. 7 22
49 184.30 precipitation 0.1 90 < th dose dependent rect. 7 22
57 185.05 radiation 40.0 90 < th dose dependent rect. 5 2
58 185.11 wind 9.0 90 < th dose dependent rect. 5 2
59 185.25 temperature 30.0 270 < th dose dependent rect. 2 18
61 185.39 humidity 50.0 90 > th dose dependent rect. 5 2
69 185.77 temperature 30.0 90 < th dose dependent sin 3 NA
74 186.15 temperature 30.0 90 < th dose dependent rect. 5 2
80 186.44 temperature 30.0 270 < th dose dependent rect. 2 8
83 186.48 temperature 30.0 90 < th dose dependent rect. 5 4
93 186.95 wind 9.0 1440 < th dose independent rect. 6 3
94 186.95 temperature 10.0 1440 > th dose independent rect. 6 3
97 186.95 humidity 50.0 1440 > th dose independent rect. 6 3
99 186.95 atmosphere 995.0 1440 > th dose independent rect. 6 3
100 186.95 atmosphere 1015.0 1440 < th dose independent rect. 6 3
101 186.95 temperature 10.0 1440 > th dose independent rect. 9 21
114 187.55 temperature 30.0 270 < th dose dependent rect. 2 13
121 187.76 radiation 30.0 1440 < th dose dependent rect. 24 5
129 188.02 temperature 25.0 270 < th dose independent rect. 3 17
131 188.11 atmosphere 995.0 90 > th dose dependent rect. 5 2
157 188.78 wind 1.0 90 > th dose independent rect. 5 2
162 188.90 temperature 10.0 90 > th dose dependent rect. 5 2
174 189.01 wind 1.0 90 > th dose independent rect. 4 4
184 189.12 temperature 30.0 270 < th dose dependent sin 5 NA
222 189.95 radiation 40.0 90 < th dose dependent rect. 5 6
241 190.44 atmosphere 995.0 90 > th dose independent rect. 7 22
249 190.69 temperature 25.0 270 < th dose independent rect. 3 8
251 190.85 radiation 1.0 90 > th dose independent rect. 4 3
276 191.25 radiation 20.0 270 < th dose dependent rect. 3 8
277 191.28 radiation 20.0 90 < th dose independent rect. 5 6
281 191.48 temperature 25.0 90 < th dose independent rect. 5 6
295 191.88 atmosphere 1015.0 90 < th dose dependent rect. 5 2
304 192.11 temperature 25.0 90 < th dose independent rect. 5 16
328 192.47 temperature 25.0 90 < th dose independent rect. 5 14
340 192.73 radiation 10.0 270 < th dose independent rect. 3 6
352 192.98 wind 9.0 90 < th dose dependent rect. 7 22
362 193.22 atmosphere 1000.0 30 > th dose independent rect. 5 17
368 193.31 temperature 20.0 270 > th dose dependent sin 6 NA
369 193.32 temperature 25.0 90 < th dose independent rect. 5 12
384 193.48 humidity 70.0 90 > th dose dependent rect. 5 6
389 193.56 radiation 40.0 90 < th dose independent rect. 5 18
399 193.80 temperature 10.0 270 > th dose dependent sin 7 NA
407 193.88 atmosphere 1015.0 90 < th dose independent rect. 7 22
419 194.10 radiation 40.0 90 < th dose dependent rect. 5 18
435 194.37 temperature 25.0 90 < th dose independent rect. 5 10
457 194.55 temperature 30.0 1440 < th dose independent rect. 6 2
484 194.73 temperature 25.0 90 < th dose independent rect. 5 8
526 195.06 radiation 1.0 1440 < th dose dependent rect. 8 16
527 195.06 atmosphere 995.0 30 > th dose dependent rect. 5 17
528 195.08 humidity 50.0 30 > th dose independent rect. 8 21
552 195.31 wind 5.0 90 < th dose independent rect. 21 8
562 195.47 temperature 20.0 90 > th dose dependent sin 4 NA
567 195.51 humidity 80.0 90 > th dose independent rect. 5 6
592 195.75 radiation 20.0 270 < th dose dependent rect. 3 4
650 196.07 wind 9.0 30 < th dose dependent rect. 22 7
691 196.36 radiation 1.0 1440 < th dose dependent sin 21 NA
741 196.69 temperature 25.0 270 > th dose independent rect. 22 15
758 196.76 radiation 1.0 1440 < th dose independent rect. 24 5
867 197.55 radiation 30.0 270 < th dose dependent rect. 16 15
874 197.61 humidity 70.0 90 > th dose dependent rect. 5 8
881 197.63 atmosphere 995.0 270 > th dose independent rect. 17 14
922 197.87 temperature 25.0 270 < th dose independent sin 4 NA
957 197.98 temperature 15.0 90 > th dose independent rect. 5 17