Os05g0587100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C family protein.
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Os05g0587100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.14 | 0.236 | 11.1 | -0.179 | 0.364 | 0.533 | -0.295 | 1.66 | -0.173 | 3.61 | 31.06 | 627 | -- | -- |
| 27.5 | 0.244 | 11 | 0.131 | 0.328 | 0.57 | -0.272 | -- | -0.102 | 3.56 | 42.93 | 536 | -- | -- |
| 25.33 | 0.234 | 11.1 | -0.19 | 0.413 | 0.501 | -- | 1.65 | -0.176 | 3.81 | 30.38 | 756 | -- | -- |
| 27.56 | 0.245 | 11 | 0.118 | 0.295 | 0.574 | -- | -- | -0.103 | 4.31 | 87.37 | 379 | -- | -- |
| 29.93 | 0.255 | 11.1 | 0.0414 | -- | 0.78 | -- | 1.02 | -0.11 | -- | 61.87 | 326 | -- | -- |
| 31.15 | 0.262 | 11.1 | -0.00611 | 0.451 | -- | 0.081 | -- | -0.186 | 4.84 | -- | -- | -- | -- |
| 31.17 | 0.261 | 11.1 | -0.00654 | 0.451 | -- | -- | -- | -0.187 | 4.78 | -- | -- | -- | -- |
| 30.83 | 0.259 | 11 | 0.187 | -- | 0.862 | -- | -- | -0.0579 | -- | 65.96 | 305 | -- | -- |
| 27.89 | 0.246 | 11.1 | -- | 0.312 | 0.519 | -- | -- | -0.123 | 4.37 | 107.5 | 379 | -- | -- |
| 41.94 | 0.303 | 11.1 | 0.0104 | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
| 31.17 | 0.261 | 11.1 | -- | 0.451 | -- | -- | -- | -0.186 | 4.78 | -- | -- | -- | -- |
| 31.69 | 0.262 | 11 | -- | -- | 0.799 | -- | -- | -0.0859 | -- | 82.24 | 304 | -- | -- |
| 41.94 | 0.302 | 11.1 | -- | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 19 | 24.71 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 17 |
| 21 | 24.74 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 15 |
| 37 | 24.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 20 |
| 44 | 24.85 | temperature | 25 | 720 | < th | dose independent | sin | 6 | NA |
| 46 | 24.85 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 57 | 24.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 79 | 24.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 9 |
| 84 | 24.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 85 | 24.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 125 | 25.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 141 | 25.09 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 6 |
| 174 | 25.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 196 | 25.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 226 | 25.24 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 227 | 25.24 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 268 | 25.29 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 21 |
| 352 | 25.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 436 | 25.43 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 10 |
| 439 | 25.43 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 450 | 25.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 511 | 25.48 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 633 | 25.57 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 721 | 25.63 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 23 |
| 764 | 25.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 774 | 25.67 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 792 | 25.68 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 11 |
| 819 | 25.70 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 820 | 25.70 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 821 | 25.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 822 | 25.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 899 | 25.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 962 | 25.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 964 | 25.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |