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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0587000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0232) R2 : 0.00815
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0944 (0.0488) R2dN8 : 0.0105 R2N8 : 0.00815
σ : 0.436
deviance : 87.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.71 0.432 2.96 0.0126 0.0175 -0.285 -0.0392 1.1 0.094 19.2 1.1 16 -- --
85.7 0.434 2.94 0.0681 0.00237 -0.181 -0.138 -- 0.11 2.73 1.1 16 -- --
84.71 0.429 2.96 0.0135 0.0176 -0.285 -- 1.09 0.0939 18.9 1.106 16 -- --
85.76 0.434 2.94 0.0717 0.00434 -0.178 -- -- 0.111 22.8 1.1 16 -- --
84.73 0.429 2.96 0.0148 -- -0.277 -- 1.08 0.0937 -- 1.12 16 -- --
86.89 0.437 2.95 0.0907 0.0636 -- -0.0958 -- 0.103 3.75 -- -- -- --
86.92 0.437 2.95 0.0922 0.0635 -- -- -- 0.103 3.96 -- -- -- --
85.77 0.433 2.94 0.0718 -- -0.179 -- -- 0.111 -- 1.109 15 -- --
85.9 0.434 2.95 -- 0.00463 -0.184 -- -- 0.103 22.2 1.1 16 -- --
87.14 0.436 2.95 0.0948 -- -- -- -- 0.105 -- -- -- -- --
87.15 0.437 2.95 -- 0.0653 -- -- -- 0.093 3.94 -- -- -- --
85.9 0.433 2.95 -- -- -0.184 -- -- 0.103 -- 1.109 15 -- --
87.38 0.436 2.95 -- -- -- -- -- 0.0944 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.09 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 81.20 wind 1.0 90 < th dose independent rect. 2 1
4 81.85 radiation 10.0 10 > th dose independent rect. 6 1
30 81.85 radiation 10.0 10 > th dose dependent rect. 6 1
56 81.99 wind 1.0 90 < th dose dependent rect. 2 1
57 82.16 radiation 10.0 30 > th dose independent rect. 16 15
58 82.17 radiation 1.0 4320 < th dose dependent rect. 3 1
59 82.20 temperature 25.0 90 > th dose independent rect. 2 1
60 82.21 temperature 25.0 90 > th dose dependent rect. 2 1
66 82.24 wind 9.0 1440 < th dose independent rect. 3 1
67 82.24 temperature 10.0 1440 > th dose independent rect. 3 1
70 82.24 temperature 30.0 1440 < th dose independent rect. 3 1
74 82.24 humidity 50.0 1440 > th dose independent rect. 3 1
83 82.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
84 82.24 radiation 1.0 1440 < th dose independent rect. 3 1
104 82.24 temperature 10.0 1440 > th dose independent rect. 4 23
108 82.24 temperature 15.0 30 > th dose dependent rect. 2 1
110 82.24 atmosphere 1005.0 30 > th dose dependent rect. 2 1
132 82.25 atmosphere 995.0 30 > th dose dependent rect. 2 1
135 82.26 temperature 10.0 30 > th dose independent rect. 2 1
137 82.26 temperature 30.0 30 < th dose independent rect. 2 1
138 82.26 humidity 50.0 30 > th dose independent rect. 2 1
141 82.26 humidity 90.0 30 > th dose independent rect. 2 1
142 82.26 atmosphere 995.0 30 > th dose independent rect. 2 1
145 82.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
147 82.26 radiation 1.0 30 < th dose independent rect. 2 1
152 82.26 precipitation 0.1 30 < th dose independent rect. 2 1
153 82.26 atmosphere 1000.0 10 < th dose independent rect. 2 2
155 82.26 temperature 10.0 30 > th dose independent rect. 3 23
156 82.26 humidity 50.0 30 > th dose dependent rect. 2 1
160 82.26 radiation 1.0 30 < th dose dependent rect. 2 1
165 82.26 precipitation 0.1 30 < th dose dependent rect. 2 1
166 82.26 atmosphere 1000.0 10 < th dose dependent rect. 2 2
171 82.28 atmosphere 1015.0 30 < th dose dependent rect. 2 1
172 82.29 atmosphere 1000.0 90 < th dose independent rect. 2 1
176 82.29 precipitation 0.1 30 < th dose independent rect. 3 23
178 82.29 precipitation 0.1 30 < th dose dependent rect. 3 23
180 82.30 atmosphere 1000.0 90 < th dose dependent rect. 2 1
183 82.31 temperature 30.0 30 < th dose dependent rect. 2 1
187 82.33 wind 1.0 30 > th dose independent rect. 2 1
259 82.60 atmosphere 1000.0 720 > th dose independent rect. 21 8
265 82.86 wind 9.0 30 < th dose independent rect. 3 23
279 83.13 atmosphere 1000.0 720 > th dose independent rect. 19 8
296 83.38 humidity 50.0 30 > th dose independent rect. 3 23
304 83.46 atmosphere 995.0 720 > th dose independent rect. 15 16
306 83.50 atmosphere 995.0 720 > th dose independent rect. 3 16
311 83.52 atmosphere 995.0 720 > th dose independent rect. 7 8
340 83.66 atmosphere 1005.0 10 > th dose dependent rect. 6 1
347 83.72 temperature 10.0 720 > th dose independent rect. 7 8
348 83.72 atmosphere 1015.0 720 < th dose independent rect. 7 8
349 83.72 temperature 10.0 720 > th dose independent rect. 15 16
354 83.76 wind 3.0 30 < th dose dependent rect. 6 1
357 83.86 wind 9.0 720 < th dose independent rect. 19 8
358 83.86 temperature 10.0 720 > th dose independent rect. 19 8
359 83.86 temperature 30.0 720 < th dose independent rect. 19 8
360 83.86 humidity 50.0 720 > th dose independent rect. 19 8
362 83.86 radiation 1.0 720 < th dose independent rect. 19 8
367 83.86 temperature 10.0 720 > th dose independent rect. 3 16
371 83.86 radiation 1.0 720 < th dose dependent rect. 19 8
382 83.94 precipitation 0.1 720 < th dose independent rect. 7 8
383 83.94 wind 1.0 10 > th dose independent rect. 17 23
384 83.94 precipitation 0.1 720 < th dose dependent rect. 7 8
388 83.97 atmosphere 995.0 720 > th dose independent rect. 17 16
392 84.01 atmosphere 995.0 720 > th dose independent rect. 5 16
393 84.02 atmosphere 995.0 720 > th dose independent rect. 9 8
394 84.02 precipitation 0.1 720 < th dose independent rect. 19 8
395 84.02 atmosphere 1000.0 270 < th dose dependent rect. 24 1
396 84.02 precipitation 0.1 720 < th dose dependent rect. 19 8
397 84.04 atmosphere 1000.0 90 < th dose independent rect. 22 10
398 84.04 atmosphere 1000.0 10 < th dose independent rect. 23 10
406 84.06 atmosphere 1000.0 720 > th dose independent rect. 17 7
408 84.07 atmosphere 1000.0 270 < th dose independent rect. 24 1
418 84.11 atmosphere 1005.0 10 > th dose dependent rect. 2 5
430 84.17 radiation 1.0 720 < th dose independent rect. 21 8
431 84.17 atmosphere 1000.0 270 > th dose independent rect. 19 11
435 84.18 radiation 10.0 720 < th dose dependent rect. 21 8
439 84.20 atmosphere 1000.0 270 < th dose independent rect. 19 13
446 84.21 temperature 30.0 30 < th dose dependent rect. 6 1
455 84.23 temperature 10.0 720 > th dose independent rect. 21 8
456 84.23 temperature 30.0 720 < th dose independent rect. 21 8
457 84.23 humidity 50.0 720 > th dose independent rect. 21 8
464 84.23 temperature 10.0 720 > th dose independent rect. 5 16
465 84.23 humidity 80.0 30 > th dose dependent rect. 6 1
467 84.24 atmosphere 1000.0 720 < th dose independent rect. 20 4
475 84.26 atmosphere 1000.0 90 > th dose independent rect. 21 12
478 84.27 temperature 10.0 720 > th dose independent rect. 9 8
479 84.27 atmosphere 1015.0 720 < th dose independent rect. 9 8
480 84.27 temperature 10.0 720 > th dose independent rect. 17 16
481 84.27 precipitation 0.1 720 < th dose independent rect. 15 16
483 84.27 precipitation 0.1 720 < th dose dependent rect. 15 16
487 84.29 atmosphere 1000.0 720 > th dose independent rect. 21 1
507 84.33 atmosphere 1000.0 270 < th dose independent rect. 20 9
508 84.33 atmosphere 1000.0 90 > th dose independent rect. 21 10
516 84.36 atmosphere 1000.0 270 < th dose independent sin 11 NA
531 84.37 atmosphere 1000.0 10 > th dose independent rect. 17 23
532 84.38 atmosphere 1000.0 270 > th dose independent sin 11 NA
559 84.42 atmosphere 995.0 720 > th dose independent rect. 13 16
560 84.42 wind 1.0 10 < th dose independent rect. 6 21
566 84.43 atmosphere 1000.0 10 < th dose dependent rect. 23 10
570 84.44 humidity 90.0 90 < th dose independent rect. 2 1
572 84.44 wind 9.0 720 < th dose independent rect. 21 8
586 84.45 radiation 10.0 30 < th dose dependent rect. 3 23
605 84.49 atmosphere 1000.0 10 > th dose independent sin 8 NA
607 84.49 atmosphere 1000.0 10 < th dose independent sin 8 NA
622 84.50 atmosphere 1015.0 30 < th dose independent rect. 3 23
636 84.52 precipitation 0.1 720 < th dose independent rect. 9 8
637 84.52 atmosphere 1000.0 30 > th dose independent rect. 17 9
641 84.52 precipitation 0.1 720 < th dose dependent rect. 9 8
648 84.53 atmosphere 995.0 720 > th dose independent rect. 1 16
658 84.55 wind 3.0 30 < th dose independent rect. 6 1
662 84.55 wind 1.0 30 < th dose independent rect. 22 5
672 84.55 wind 3.0 30 < th dose dependent rect. 2 6
678 84.56 precipitation 0.1 720 < th dose independent rect. 21 8
695 84.56 precipitation 0.1 720 < th dose dependent rect. 21 8
708 84.58 wind 1.0 10 > th dose independent sin 16 NA
733 84.61 atmosphere 1005.0 720 < th dose dependent rect. 21 2
740 84.62 atmosphere 1005.0 720 < th dose dependent rect. 20 4
753 84.64 atmosphere 1000.0 720 > th dose independent rect. 21 4
762 84.64 atmosphere 995.0 30 > th dose dependent rect. 3 23
772 84.65 precipitation 0.1 720 < th dose independent rect. 5 16
773 84.65 wind 1.0 10 > th dose independent rect. 21 23
778 84.65 precipitation 0.1 720 < th dose dependent rect. 5 16
784 84.66 precipitation 0.1 720 < th dose independent rect. 3 16
787 84.66 precipitation 0.1 720 < th dose dependent rect. 3 16
797 84.67 temperature 25.0 90 > th dose dependent rect. 22 10
808 84.68 radiation 1.0 30 < th dose independent rect. 3 23
831 84.71 humidity 50.0 720 > th dose independent rect. 5 8
835 84.71 temperature 30.0 30 < th dose independent rect. 3 23
845 84.72 temperature 10.0 720 > th dose independent rect. 17 8
846 84.72 radiation 30.0 720 < th dose independent rect. 17 8
850 84.72 temperature 10.0 720 > th dose independent rect. 1 16
854 84.73 atmosphere 1005.0 30 > th dose independent rect. 6 1
905 84.75 humidity 90.0 30 < th dose independent rect. 6 1
926 84.76 temperature 10.0 720 > th dose independent rect. 5 8
927 84.76 atmosphere 995.0 720 > th dose independent rect. 5 8
928 84.76 atmosphere 1015.0 720 < th dose independent rect. 5 8
931 84.76 temperature 10.0 720 > th dose independent rect. 13 16
964 84.78 wind 9.0 1440 < th dose independent rect. 7 1
965 84.78 temperature 25.0 10 > th dose independent rect. 6 1
966 84.78 temperature 10.0 30 > th dose independent rect. 6 1
968 84.78 temperature 10.0 1440 > th dose independent rect. 7 1
972 84.78 temperature 30.0 30 < th dose independent rect. 6 1
973 84.78 temperature 30.0 1440 < th dose independent rect. 7 1
977 84.78 humidity 50.0 30 > th dose independent rect. 6 1
980 84.78 humidity 50.0 1440 > th dose independent rect. 7 1
985 84.78 atmosphere 995.0 30 > th dose independent rect. 6 1
986 84.78 atmosphere 995.0 1440 > th dose independent rect. 7 1
987 84.78 atmosphere 1015.0 30 < th dose independent rect. 6 1
988 84.78 atmosphere 1015.0 1440 < th dose independent rect. 7 1
989 84.78 radiation 20.0 30 < th dose independent rect. 6 1
992 84.78 precipitation 0.1 30 < th dose independent rect. 6 1
1000 84.78 temperature 10.0 30 > th dose independent rect. 7 23