Os05g0586500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid transporter, transmembrane family protein.
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Os05g0586500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid transporter, transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 372.87 | 0.907 | 5.32 | 0.218 | 5.68 | -3.16 | -0.609 | 5.24 | -0.68 | 6.48 | 17.2 | 75 | 1.88 | -- |
| 392.88 | 0.923 | 5.39 | -0.6 | 6.22 | -3.52 | 1.27 | -- | -0.883 | 6.28 | 15.24 | 42 | 1.77 | -- |
| 373.13 | 0.9 | 5.32 | 0.26 | 5.62 | -3.12 | -- | 5.36 | -0.688 | 6.44 | 17.3 | 70 | 2 | -- |
| 395.91 | 0.927 | 5.41 | -0.525 | 6.01 | -3.78 | -- | -- | -0.895 | 5.94 | 15.09 | 140 | 3 | -- |
| 479.06 | 1.02 | 5.59 | -0.773 | -- | -4.64 | -- | -1.22 | -1.23 | -- | 4.372 | 602 | 16 | -- |
| 510.29 | 1.06 | 5.57 | -1.13 | 3.68 | -- | 1.43 | -- | -1.44 | 6.91 | -- | -- | -- | -- |
| 515.59 | 1.06 | 5.57 | -1.11 | 3.69 | -- | -- | -- | -1.44 | 6.9 | -- | -- | -- | -- |
| 471.38 | 1.01 | 5.6 | -0.6 | -- | -4.65 | -- | -- | -1.18 | -- | 0.6474 | 752 | 17.6 | -- |
| 403.45 | 0.936 | 5.39 | -- | 6.25 | -4.07 | -- | -- | -0.817 | 5.95 | 14.9 | 134 | 2.86 | -- |
| 1228.96 | 1.64 | 5.65 | -1.03 | -- | -- | -- | -- | -1.37 | -- | -- | -- | -- | -- |
| 547.98 | 1.1 | 5.54 | -- | 3.68 | -- | -- | -- | -1.32 | 6.91 | -- | -- | -- | -- |
| 479.73 | 1.02 | 5.59 | -- | -- | -4.72 | -- | -- | -1.11 | -- | 0.1445 | 785 | 17.9 | -- |
| 1256.95 | 1.65 | 5.62 | -- | -- | -- | -- | -- | -1.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 368.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 5 | 377.40 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 18 | 384.30 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 21 |
| 21 | 385.97 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 14 |
| 50 | 391.07 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 67 | 395.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 77 | 396.29 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 4 |
| 79 | 396.44 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 91 | 397.03 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 22 |
| 96 | 397.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 105 | 397.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 110 | 397.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 130 | 398.78 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 166 | 400.29 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 246 | 403.85 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 17 |
| 280 | 404.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 290 | 405.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 295 | 405.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 349 | 406.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 362 | 406.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 17 |
| 384 | 406.76 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 397 | 406.92 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 411 | 407.12 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 415 | 407.23 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 15 |
| 435 | 407.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 450 | 407.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 466 | 407.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 523 | 408.83 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 602 | 410.08 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 654 | 410.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 668 | 410.80 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 669 | 410.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 715 | 411.57 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 721 | 411.68 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 728 | 411.73 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 8 |
| 729 | 411.73 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 11 |
| 821 | 412.58 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 841 | 412.77 | temperature | 20 | 720 | < th | dose independent | sin | 13 | NA |
| 871 | 413.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 889 | 413.14 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 995 | 414.07 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |