Os05g0585900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial substrate carrier family protein.
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Os05g0585900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial substrate carrier family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.68 | 0.328 | 12.8 | -0.647 | 3.03 | 1.1 | -0.458 | -0.41 | 0.00195 | 6.7 | 1.135 | 99 | -- | -- |
| 49.38 | 0.327 | 12.8 | -0.659 | 2.98 | 1.09 | -0.283 | -- | 0.000497 | 6.68 | 1.72 | 113 | -- | -- |
| 48.58 | 0.325 | 12.8 | -0.648 | 2.94 | 1.11 | -- | -0.37 | -0.0118 | 6.69 | 1.795 | 124 | -- | -- |
| 49.25 | 0.327 | 12.8 | -0.652 | 2.9 | 1.2 | -- | -- | -0.0084 | 6.86 | 1.912 | 129 | -- | -- |
| 56.92 | 0.351 | 12.8 | -0.505 | -- | 3.68 | -- | -1.82 | 0.138 | -- | 2.033 | 647 | -- | -- |
| 65.44 | 0.379 | 12.8 | -0.728 | 3.26 | -- | -0.285 | -- | -0.089 | 5.15 | -- | -- | -- | -- |
| 65.64 | 0.379 | 12.8 | -0.728 | 3.26 | -- | -- | -- | -0.0877 | 5.15 | -- | -- | -- | -- |
| 53.91 | 0.342 | 12.8 | -0.479 | -- | 3.7 | -- | -- | 0.0774 | -- | 1.841 | 651 | -- | -- |
| 60.65 | 0.363 | 12.8 | -- | 2.9 | 1.18 | -- | -- | 0.0194 | 6.82 | 1.333 | 139 | -- | -- |
| 621.46 | 1.16 | 12.8 | -0.612 | -- | -- | -- | -- | -0.00532 | -- | -- | -- | -- | -- |
| 79.59 | 0.417 | 12.8 | -- | 3.25 | -- | -- | -- | -0.00664 | 5.16 | -- | -- | -- | -- |
| 59.81 | 0.36 | 12.8 | -- | -- | 3.71 | -- | -- | 0.125 | -- | 1.56 | 655 | -- | -- |
| 631.35 | 1.17 | 12.8 | -- | -- | -- | -- | -- | 0.0626 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.69 | radiation | 1.0 | 90 | < th | dose dependent | sin | 16 | NA |
| 2 | 37.79 | radiation | 1.0 | 90 | < th | dose independent | sin | 15 | NA |
| 3 | 37.87 | radiation | 1.0 | 90 | > th | dose independent | sin | 15 | NA |
| 8 | 38.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 15 | 39.69 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 25 | 39.70 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 40 | 39.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 41 | 40.05 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 45 | 40.21 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 48 | 40.30 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 62 | 40.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 65 | 40.67 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 68 | 40.68 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 88 | 41.11 | humidity | 80.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 92 | 41.14 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 94 | 41.21 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 6 |
| 97 | 41.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 99 | 41.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 108 | 41.40 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 121 | 41.82 | radiation | 1.0 | 270 | > th | dose independent | sin | 21 | NA |
| 122 | 41.82 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 139 | 41.90 | radiation | 1.0 | 270 | < th | dose independent | sin | 21 | NA |
| 142 | 41.91 | humidity | 80.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 148 | 42.10 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 153 | 42.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 13 |
| 195 | 42.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 10 |
| 196 | 42.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 201 | 42.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 3 |
| 202 | 42.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 206 | 42.71 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 209 | 42.78 | temperature | 25.0 | 10 | > th | dose independent | rect. | 14 | 5 |
| 214 | 42.83 | radiation | 1.0 | 270 | < th | dose dependent | sin | 21 | NA |
| 218 | 42.86 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 220 | 42.86 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 222 | 42.86 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 223 | 42.87 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 231 | 42.93 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 241 | 43.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 247 | 43.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 21 |
| 278 | 43.19 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 288 | 43.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 1 |
| 289 | 43.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 292 | 43.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 293 | 43.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 294 | 43.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 296 | 43.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 297 | 43.27 | radiation | 40.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 298 | 43.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 305 | 43.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 314 | 43.34 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 315 | 43.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 317 | 43.35 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 319 | 43.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 325 | 43.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 5 |
| 326 | 43.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 335 | 43.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 336 | 43.48 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 349 | 43.55 | wind | 1.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 353 | 43.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 392 | 43.70 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 24 | 19 |
| 394 | 43.71 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 396 | 43.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 423 | 43.75 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 14 | 5 |
| 425 | 43.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 427 | 43.76 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 429 | 43.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 431 | 43.76 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 434 | 43.78 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 5 |
| 436 | 43.78 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 5 |
| 440 | 43.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 450 | 43.84 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 460 | 43.86 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 464 | 43.86 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 486 | 43.98 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 498 | 44.00 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 512 | 44.04 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 518 | 44.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 519 | 44.07 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 521 | 44.08 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 10 | 13 |
| 522 | 44.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 523 | 44.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 531 | 44.14 | radiation | 1.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 536 | 44.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 543 | 44.20 | humidity | 50.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 555 | 44.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 564 | 44.30 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 572 | 44.34 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 5 |
| 597 | 44.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 601 | 44.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 659 | 44.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 23 |
| 661 | 44.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 702 | 44.72 | wind | 1.0 | 10 | > th | dose dependent | rect. | 14 | 5 |
| 736 | 44.88 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 4 |
| 756 | 45.00 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 757 | 45.01 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 4 |
| 797 | 45.12 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 5 |
| 802 | 45.14 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 19 |
| 804 | 45.14 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 19 |
| 805 | 45.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 835 | 45.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 21 |
| 838 | 45.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 855 | 45.31 | radiation | 40.0 | 30 | < th | dose independent | rect. | 12 | 7 |
| 887 | 45.44 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 1 |
| 896 | 45.49 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 913 | 45.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 916 | 45.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 917 | 45.54 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 918 | 45.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 919 | 45.54 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 920 | 45.54 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 926 | 45.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 946 | 45.61 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 974 | 45.70 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 985 | 45.75 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 996 | 45.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 14 |
| 998 | 45.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 14 |