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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0585800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1221 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.8 (0.0213) R2 : 0.0074
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0828 (0.0449) R2dN8 : 0.00955 R2N8 : 0.0074
σ : 0.402
deviance : 74.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.17 0.387 3.44 1.44 0.144 -75.2 0.689 -156 0.0978 3.93 15 90 -- --
69.24 0.391 2.8 0.102 0.146 -1.14 0.672 -- 0.1 3.96 15 90 -- --
70.54 0.391 3.45 1.44 0.147 -75.2 -- -156 0.0939 3.69 15.04 92 -- --
70.52 0.394 2.8 0.0898 0.15 -1.04 -- -- 0.0953 3.58 14.54 40 -- --
71.74 0.394 3.44 1.42 -- -73.9 -- -154 0.0966 -- 15 92 -- --
71.73 0.397 2.8 0.0571 0.157 -- 0.576 -- 0.0881 4.04 -- -- -- --
72.61 0.399 2.8 0.0499 0.161 -- -- -- 0.0849 3.24 -- -- -- --
71.77 0.396 2.8 0.0979 -- -1.09 -- -- 0.0998 -- 14.57 60 -- --
70.73 0.394 2.8 -- 0.152 -0.995 -- -- 0.0851 3.56 14.54 40 -- --
74.09 0.402 2.8 0.0567 -- -- -- -- 0.0891 -- -- -- -- --
72.68 0.399 2.8 -- 0.162 -- -- -- 0.0793 3.24 -- -- -- --
72.02 0.397 2.8 -- -- -1.04 -- -- 0.0887 -- 14.57 60 -- --
74.17 0.402 2.8 -- -- -- -- -- 0.0828 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.69 wind 3.0 270 > th dose dependent rect. 2 1
2 64.71 wind 5.0 270 > th dose independent rect. 2 1
22 66.54 wind 9.0 10 > th dose independent rect. 18 1
25 66.54 wind 9.0 10 > th dose dependent rect. 18 1
33 66.65 temperature 15.0 30 > th dose independent rect. 5 23
35 66.70 temperature 20.0 90 < th dose dependent rect. 20 3
38 66.78 wind 9.0 90 > th dose dependent rect. 16 3
72 66.88 wind 9.0 90 > th dose independent rect. 17 17
107 66.98 humidity 80.0 720 < th dose independent rect. 24 1
110 66.98 humidity 80.0 720 < th dose dependent rect. 24 1
114 67.04 humidity 80.0 10 < th dose independent rect. 24 4
119 67.05 humidity 80.0 10 < th dose dependent rect. 24 4
124 67.11 humidity 80.0 10 < th dose independent rect. 24 2
129 67.11 humidity 80.0 10 < th dose dependent rect. 24 2
159 67.25 wind 9.0 90 > th dose independent sin 13 NA
165 67.39 wind 9.0 90 < th dose independent sin 13 NA
166 67.40 wind 9.0 90 > th dose dependent sin 13 NA
237 67.57 temperature 20.0 10 < th dose independent rect. 4 1
331 67.91 temperature 20.0 90 < th dose independent rect. 20 3
350 68.11 temperature 20.0 90 < th dose independent rect. 20 1
375 68.28 temperature 25.0 720 < th dose dependent rect. 16 1
387 68.38 humidity 90.0 720 > th dose dependent rect. 15 2
394 68.41 temperature 20.0 720 < th dose independent rect. 16 1
412 68.45 temperature 20.0 270 < th dose independent rect. 18 3
416 68.46 temperature 20.0 90 > th dose dependent rect. 4 1
436 68.50 temperature 20.0 10 < th dose independent rect. 3 9
438 68.50 temperature 20.0 10 < th dose independent rect. 3 13
442 68.50 temperature 15.0 1440 > th dose independent rect. 8 16
480 68.54 humidity 90.0 720 > th dose independent rect. 15 2
491 68.56 wind 7.0 1440 < th dose independent rect. 5 1
493 68.56 temperature 10.0 1440 > th dose independent rect. 5 1
496 68.56 temperature 30.0 1440 < th dose independent rect. 5 1
500 68.56 humidity 50.0 1440 > th dose independent rect. 5 1
509 68.56 atmosphere 995.0 1440 > th dose independent rect. 5 1
510 68.56 atmosphere 1015.0 1440 < th dose independent rect. 5 1
511 68.56 radiation 20.0 1440 < th dose independent rect. 5 1
521 68.56 temperature 20.0 720 < th dose independent rect. 12 5
527 68.56 temperature 10.0 1440 > th dose independent rect. 6 23
549 68.60 temperature 20.0 30 > th dose independent rect. 4 1
551 68.60 temperature 20.0 10 < th dose independent rect. 3 7
553 68.60 radiation 1.0 720 < th dose dependent rect. 12 4
564 68.62 humidity 90.0 720 > th dose independent rect. 12 5
584 68.65 humidity 90.0 10 < th dose independent rect. 4 1
595 68.65 temperature 20.0 90 < th dose dependent rect. 20 7
597 68.66 humidity 90.0 30 > th dose independent rect. 3 1
609 68.67 temperature 20.0 270 < th dose dependent rect. 17 10
613 68.68 radiation 1.0 720 < th dose independent rect. 13 2
617 68.68 radiation 1.0 720 < th dose dependent rect. 13 2
627 68.69 wind 1.0 30 > th dose independent rect. 3 4
638 68.71 temperature 25.0 90 < th dose dependent rect. 2 3
643 68.71 temperature 20.0 90 < th dose dependent rect. 20 9
646 68.72 temperature 25.0 10 > th dose independent rect. 2 3
647 68.72 temperature 15.0 1440 > th dose independent rect. 12 9
657 68.73 temperature 15.0 720 > th dose independent rect. 16 7
669 68.74 temperature 15.0 1440 > th dose independent rect. 6 18
672 68.74 temperature 20.0 720 < th dose dependent rect. 12 2
680 68.75 atmosphere 1005.0 30 > th dose independent rect. 4 1
681 68.75 wind 1.0 30 > th dose independent rect. 3 2
702 68.76 temperature 20.0 270 < th dose dependent sin 15 NA
720 68.77 atmosphere 1005.0 30 > th dose dependent rect. 4 1
735 68.78 wind 3.0 30 < th dose dependent rect. 4 1
737 68.78 temperature 25.0 90 < th dose dependent rect. 2 1
758 68.79 temperature 25.0 10 > th dose dependent rect. 2 3
826 68.83 humidity 90.0 30 > th dose dependent rect. 3 1
858 68.85 temperature 15.0 10 > th dose independent rect. 9 23
879 68.87 wind 5.0 30 < th dose independent rect. 4 1
892 68.88 temperature 10.0 30 > th dose independent rect. 4 1
894 68.88 temperature 30.0 30 < th dose independent rect. 4 1
895 68.88 humidity 50.0 30 > th dose independent rect. 4 1
899 68.88 atmosphere 995.0 30 > th dose independent rect. 4 1
901 68.88 atmosphere 1010.0 30 < th dose independent rect. 4 1
903 68.88 radiation 1.0 30 < th dose independent rect. 4 1
917 68.88 radiation 10.0 30 < th dose dependent rect. 4 1
926 68.89 precipitation 0.1 30 < th dose independent rect. 4 1
929 68.89 temperature 15.0 10 > th dose independent rect. 3 23
930 68.89 precipitation 0.1 30 < th dose independent rect. 5 23
933 68.89 precipitation 0.1 30 < th dose dependent rect. 4 1
947 68.89 precipitation 0.1 30 < th dose dependent rect. 5 23
960 68.91 humidity 50.0 30 > th dose dependent rect. 4 1
968 68.92 temperature 15.0 1440 > th dose independent sin 20 NA
969 68.92 temperature 15.0 1440 > th dose independent rect. 21 3
978 68.93 temperature 15.0 1440 > th dose independent sin 0 NA
980 68.93 temperature 15.0 1440 > th dose independent rect. 12 13
981 68.93 temperature 15.0 1440 < th dose independent rect. 10 14