Os05g0585700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0585700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.33 | 0.555 | 7.28 | -1.02 | 0.342 | -1.92 | 0.815 | 1.26 | -1.4 | 10.5 | 29.38 | 832 | -- | -- |
| 140.51 | 0.552 | 7.25 | -0.768 | 0.324 | -1.91 | 1.04 | -- | -1.33 | 10.7 | 28.75 | 857 | -- | -- |
| 141.37 | 0.554 | 7.29 | -1.09 | 0.352 | -1.9 | -- | 1.84 | -1.42 | 9.75 | 29.43 | 823 | -- | -- |
| 145.05 | 0.561 | 7.25 | -0.743 | 0.343 | -1.94 | -- | -- | -1.35 | 9.89 | 28.55 | 831 | -- | -- |
| 146.35 | 0.563 | 7.29 | -1.02 | -- | -1.65 | -- | 1.64 | -1.4 | -- | 27.3 | 986 | -- | -- |
| 192.69 | 0.651 | 7.17 | -0.233 | 0.0432 | -- | -1.11 | -- | -0.939 | 0.723 | -- | -- | -- | -- |
| 197.89 | 0.659 | 7.17 | -0.191 | 0.0512 | -- | -- | -- | -0.933 | 22.8 | -- | -- | -- | -- |
| 149.01 | 0.569 | 7.25 | -0.718 | -- | -1.77 | -- | -- | -1.33 | -- | 26.35 | 1037 | -- | -- |
| 156.76 | 0.586 | 7.23 | -- | 0.572 | -1.65 | -- | -- | -1.2 | 1.84 | 29.01 | 737 | -- | -- |
| 198.06 | 0.658 | 7.16 | -0.19 | -- | -- | -- | -- | -0.933 | -- | -- | -- | -- | -- |
| 198.85 | 0.66 | 7.16 | -- | 0.0499 | -- | -- | -- | -0.912 | 22.5 | -- | -- | -- | -- |
| 160.73 | 0.59 | 7.22 | -- | -- | -1.44 | -- | -- | -1.19 | -- | 26.38 | 964 | -- | -- |
| 199 | 0.658 | 7.16 | -- | -- | -- | -- | -- | -0.912 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 2 | 136.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 19 | 137.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 33 | 137.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 34 | 137.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 46 | 138.19 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 47 | 138.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 61 | 138.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 75 | 138.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 9 |
| 149 | 140.16 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 152 | 140.21 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 157 | 140.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 160 | 140.29 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 185 | 140.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 192 | 140.62 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 198 | 140.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 214 | 140.92 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 228 | 141.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 234 | 141.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 240 | 141.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 247 | 141.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 257 | 141.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 262 | 141.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 266 | 141.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 279 | 141.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 280 | 141.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 288 | 141.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 289 | 141.72 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 298 | 141.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 307 | 141.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 312 | 141.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 314 | 141.92 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 322 | 141.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 344 | 142.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 376 | 142.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 378 | 142.30 | temperature | 25 | 1440 | < th | dose independent | sin | 21 | NA |
| 387 | 142.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 406 | 142.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 408 | 142.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 419 | 142.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 422 | 142.54 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 439 | 142.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 450 | 142.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 464 | 142.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 466 | 142.73 | temperature | 25 | 1440 | > th | dose independent | sin | 21 | NA |
| 745 | 143.72 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 764 | 143.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 923 | 144.31 | temperature | 15 | 720 | > th | dose dependent | sin | 2 | NA |
| 964 | 144.44 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 971 | 144.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |