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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0584400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0477) R2 : 0.553
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.77 (0.131) R2dC : 0.505 R2C : 0.192
β3 : -2.7 (0.151) R2dE : 0.362 R2E : 0.0495
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.109 (0.1) R2dN8 : 0.00147 R2N8 : -0.00519
σ : 0.894
deviance : 368.65
__
_____
C
peak time of C : 7.86
E
wheather : radiation
threshold : 10.41
memory length : 41
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 22.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
345.74 0.874 4.19 -0.667 2.79 -2.63 -2 0.118 -0.17 7.95 12.16 31 22.2 --
345.26 0.865 4.19 -0.663 2.81 -2.63 -1.95 -- -0.169 7.91 12.18 36 22.4 --
356.25 0.879 4.18 -0.684 2.85 -2.76 -- -0.161 -0.153 7.87 11.71 36 22.3 --
356.2 0.879 4.19 -0.723 2.83 -2.72 -- -- -0.174 7.78 11.69 37 22.4 --
483.52 1.03 4.24 -0.773 -- -2.12 -- 1.3 -0.0644 -- 29.29 4 7.37 --
452.74 0.998 4.18 -0.714 2.36 -- -1.48 -- -0.034 10.5 -- -- -- --
461.6 1.01 4.18 -0.772 2.37 -- -- -- -0.0369 10.6 -- -- -- --
462.71 1 4.24 -0.78 -- -2.35 -- -- -0.033 -- 893.1 39 7.71 --
368.65 0.894 4.18 -- 2.77 -2.7 -- -- -0.109 7.86 10.41 41 22.4 --
807.3 1.33 4.24 -0.816 -- -- -- -- -0.0486 -- -- -- -- --
477.3 1.02 4.16 -- 2.37 -- -- -- 0.0491 10.6 -- -- -- --
477.66 1.02 4.22 -- -- -2.36 -- -- 0.048 -- 2092 6 7.41 --
824.86 1.34 4.22 -- -- -- -- -- 0.042 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 346.58 radiation 1.0 270 < th dose independent rect. 22 10
4 347.23 radiation 1.0 270 > th dose independent sin 8 NA
5 347.78 radiation 1.0 270 < th dose independent sin 8 NA
6 347.98 radiation 10.0 30 < th dose dependent sin 4 NA
8 348.94 radiation 1.0 270 < th dose independent rect. 22 14
14 350.37 radiation 1.0 270 < th dose dependent sin 8 NA
20 350.91 radiation 1.0 270 < th dose dependent rect. 22 10
24 351.37 radiation 1.0 90 < th dose independent sin 4 NA
36 352.38 radiation 1.0 90 > th dose independent rect. 4 9
50 353.02 radiation 1.0 90 > th dose independent sin 4 NA
52 353.32 radiation 1.0 270 < th dose dependent rect. 22 14
69 354.73 humidity 50.0 270 > th dose independent rect. 5 17
82 356.33 precipitation 0.1 270 < th dose independent rect. 11 18
83 356.33 precipitation 0.1 270 < th dose dependent rect. 11 18
87 356.66 precipitation 0.1 270 < th dose independent rect. 12 16
88 356.66 precipitation 0.1 270 < th dose dependent rect. 12 16
96 357.82 precipitation 0.1 270 < th dose independent rect. 23 6
97 357.82 precipitation 0.1 270 < th dose dependent rect. 23 6
130 359.42 wind 9.0 270 < th dose independent rect. 23 6
131 359.42 temperature 10.0 270 > th dose independent rect. 23 6
132 359.42 temperature 30.0 270 < th dose independent rect. 23 6
133 359.42 humidity 50.0 270 > th dose independent rect. 23 6
136 359.42 atmosphere 995.0 270 > th dose independent rect. 23 6
140 359.42 temperature 10.0 270 > th dose independent rect. 5 18
141 359.74 precipitation 0.1 270 < th dose independent rect. 5 6
142 359.74 precipitation 0.1 270 < th dose dependent rect. 5 6
152 360.04 temperature 10.0 270 > th dose independent rect. 5 6
153 360.04 atmosphere 995.0 270 > th dose independent rect. 5 6
154 360.04 atmosphere 1015.0 270 < th dose independent rect. 5 6
155 360.04 temperature 10.0 270 > th dose independent rect. 11 18
169 360.10 precipitation 0.1 270 < th dose independent rect. 4 8
170 360.10 precipitation 0.1 270 < th dose dependent rect. 4 8
171 360.12 humidity 50.0 270 > th dose independent rect. 5 6
176 360.33 wind 9.0 270 < th dose independent rect. 5 6
178 360.45 radiation 10.0 90 < th dose dependent rect. 1 7
180 360.50 radiation 20.0 270 < th dose independent rect. 16 8
181 360.59 temperature 10.0 270 > th dose independent rect. 4 8
182 360.59 atmosphere 995.0 270 > th dose independent rect. 4 8
183 360.59 atmosphere 1015.0 270 < th dose independent rect. 4 8
184 360.59 temperature 10.0 270 > th dose independent rect. 12 16
197 360.72 wind 9.0 270 < th dose independent rect. 5 18
201 360.86 wind 9.0 270 < th dose independent rect. 11 18
202 360.90 humidity 50.0 270 > th dose independent rect. 4 8
203 360.92 wind 9.0 270 < th dose independent rect. 4 8
208 361.26 atmosphere 1015.0 270 < th dose independent rect. 23 6
210 361.39 temperature 30.0 270 < th dose independent rect. 17 17
227 361.77 wind 9.0 270 < th dose independent rect. 12 16
253 362.40 radiation 40.0 270 < th dose dependent rect. 16 8
254 362.43 humidity 50.0 270 > th dose independent rect. 16 8
258 362.70 humidity 90.0 90 < th dose independent rect. 6 7
260 362.78 humidity 60.0 270 > th dose independent rect. 17 17
262 362.86 atmosphere 995.0 270 > th dose independent rect. 24 16
267 363.24 wind 1.0 270 > th dose independent rect. 10 8
268 363.25 precipitation 0.1 270 < th dose independent rect. 24 16
270 363.25 precipitation 0.1 270 < th dose dependent rect. 24 16
272 363.35 humidity 90.0 10 < th dose independent rect. 6 8
284 363.82 precipitation 0.1 270 < th dose independent rect. 5 18
285 363.82 precipitation 0.1 270 < th dose dependent rect. 5 18
286 363.87 wind 9.0 270 < th dose independent rect. 16 8
290 364.02 temperature 10.0 270 > th dose independent rect. 16 8
292 364.02 temperature 10.0 270 > th dose independent rect. 24 16
293 364.03 atmosphere 1015.0 270 < th dose independent rect. 24 16
299 364.14 radiation 10.0 90 < th dose dependent rect. 1 14
300 364.17 precipitation 0.1 270 < th dose independent rect. 10 8
301 364.17 precipitation 0.1 270 < th dose dependent rect. 10 8
312 364.42 atmosphere 995.0 270 > th dose independent rect. 18 16
323 364.63 wind 9.0 270 < th dose independent rect. 24 16
325 364.79 atmosphere 1015.0 270 < th dose independent rect. 5 17
326 364.80 humidity 50.0 270 > th dose dependent rect. 23 6
341 364.98 precipitation 0.1 10 < th dose independent rect. 14 16
342 364.98 precipitation 0.1 10 < th dose dependent rect. 14 16
351 365.31 temperature 10.0 270 > th dose independent rect. 10 8
352 365.31 atmosphere 1015.0 270 < th dose independent rect. 10 8
353 365.31 temperature 10.0 270 > th dose independent rect. 18 16
358 365.49 wind 9.0 270 < th dose independent rect. 18 16
400 366.40 atmosphere 995.0 270 > th dose independent rect. 16 8
404 366.55 atmosphere 995.0 270 > th dose independent rect. 12 17
409 366.60 wind 9.0 270 < th dose dependent rect. 23 6
418 366.71 temperature 10.0 270 > th dose dependent rect. 23 6
420 366.73 wind 9.0 270 < th dose independent rect. 10 8
424 366.85 atmosphere 995.0 270 > th dose independent rect. 5 18
456 367.13 humidity 50.0 270 > th dose independent rect. 17 6
461 367.18 humidity 80.0 10 > th dose dependent rect. 2 7
477 367.36 radiation 1.0 10 > th dose independent rect. 6 8
548 368.39 radiation 40.0 10 < th dose independent rect. 13 17
556 368.46 humidity 50.0 270 > th dose dependent rect. 17 6
568 368.80 atmosphere 995.0 270 > th dose independent rect. 10 7
581 368.97 wind 1.0 270 > th dose independent rect. 16 8
583 369.04 radiation 1.0 90 < th dose independent rect. 2 12
587 369.15 temperature 30.0 270 < th dose independent rect. 5 6
605 369.45 radiation 1.0 90 < th dose independent rect. 2 15
616 369.52 precipitation 0.1 270 < th dose independent rect. 18 16
618 369.52 precipitation 0.1 270 < th dose dependent rect. 18 16
627 369.67 wind 9.0 270 < th dose dependent rect. 5 7
650 369.81 precipitation 0.1 270 < th dose independent rect. 16 8
652 369.81 precipitation 0.1 270 < th dose dependent rect. 16 8
659 369.97 temperature 30.0 270 < th dose independent rect. 17 6
680 370.32 radiation 1.0 90 < th dose independent rect. 2 6
723 371.04 precipitation 0.1 10 < th dose independent rect. 2 4
726 371.04 precipitation 0.1 10 < th dose dependent rect. 2 4
728 371.06 precipitation 0.1 270 < th dose independent rect. 1 3
730 371.06 precipitation 0.1 270 < th dose dependent rect. 1 3
779 371.79 radiation 40.0 270 < th dose independent rect. 5 18
820 372.29 radiation 40.0 270 < th dose independent rect. 5 6
823 372.34 radiation 40.0 90 < th dose independent rect. 13 17
912 373.30 temperature 10.0 270 > th dose independent rect. 1 3
914 373.30 temperature 30.0 270 < th dose independent rect. 1 3
915 373.30 humidity 50.0 270 > th dose independent rect. 1 3
918 373.30 atmosphere 995.0 270 > th dose independent rect. 1 3
919 373.30 atmosphere 1010.0 270 < th dose independent rect. 1 3
921 373.30 radiation 1.0 270 < th dose independent rect. 1 3
926 373.30 temperature 10.0 270 > th dose independent rect. 4 21
927 373.30 radiation 1.0 270 < th dose dependent rect. 1 3
932 373.31 wind 9.0 270 < th dose independent rect. 1 3
960 373.66 humidity 80.0 10 > th dose dependent rect. 2 13
981 373.94 precipitation 0.1 10 < th dose independent rect. 6 8
983 373.94 precipitation 0.1 10 < th dose dependent rect. 6 8