Os05g0584200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Late embryogenesis abundant protein Lea14-A.
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Os05g0584200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Late embryogenesis abundant protein Lea14-A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.83 | 0.234 | 14.2 | -0.257 | 1.27 | 0.603 | -0.0542 | -0.534 | -0.197 | 21.9 | 20.07 | 4759 | -- | -- |
| 25.13 | 0.233 | 14.2 | -0.224 | 1.25 | 0.58 | -0.0554 | -- | -0.195 | 21.9 | 20.07 | 4760 | -- | -- |
| 24.84 | 0.232 | 14.2 | -0.256 | 1.26 | 0.602 | -- | -0.529 | -0.198 | 21.9 | 20.08 | 4761 | -- | -- |
| 25.11 | 0.233 | 14.2 | -0.219 | 1.26 | 0.588 | -- | -- | -0.196 | 21.9 | 20.08 | 4760 | -- | -- |
| 97.68 | 0.463 | 14.1 | -0.0417 | -- | -0.592 | -- | -0.559 | -0.0753 | -- | 20.08 | 4761 | -- | -- |
| 31.26 | 0.262 | 14.1 | -0.146 | 1.27 | -- | -0.0342 | -- | -0.0786 | 21.7 | -- | -- | -- | -- |
| 31.27 | 0.262 | 14.1 | -0.145 | 1.27 | -- | -- | -- | -0.0786 | 21.7 | -- | -- | -- | -- |
| 51.66 | 0.335 | 14.1 | -0.355 | -- | 1.91 | -- | -- | -0.225 | -- | 1.26 | 2529 | -- | -- |
| 25.82 | 0.237 | 14.2 | -- | 1.25 | 0.543 | -- | -- | -0.163 | 21.9 | 21.79 | 4758 | -- | -- |
| 126.92 | 0.526 | 14.1 | -0.134 | -- | -- | -- | -- | -0.0806 | -- | -- | -- | -- | -- |
| 31.82 | 0.264 | 14.1 | -- | 1.27 | -- | -- | -- | -0.0624 | 21.7 | -- | -- | -- | -- |
| 49.36 | 0.327 | 14.2 | -- | -- | 1.65 | -- | -- | -0.45 | -- | 1.31 | 1111 | -- | -- |
| 127.4 | 0.527 | 14.1 | -- | -- | -- | -- | -- | -0.0657 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.94 | radiation | 20 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 4 | 23.38 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 10 | 23.45 | humidity | 60 | 43200 | < th | dose independent | sin | 5 | NA |
| 13 | 23.50 | humidity | 70 | 43200 | < th | dose dependent | sin | 5 | NA |
| 14 | 23.51 | humidity | 60 | 43200 | > th | dose independent | sin | 6 | NA |
| 17 | 23.52 | radiation | 10 | 4320 | < th | dose dependent | rect. | 14 | 11 |
| 24 | 23.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 25 | 23.53 | radiation | 10 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 35 | 23.56 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 17 |
| 37 | 23.56 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 93 | 23.63 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 116 | 23.66 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 168 | 23.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 170 | 23.72 | humidity | 70 | 43200 | < th | dose dependent | sin | 11 | NA |
| 206 | 23.78 | humidity | 60 | 43200 | < th | dose independent | no | NA | NA |
| 207 | 23.78 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 209 | 23.78 | humidity | 60 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 210 | 23.78 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 211 | 23.78 | humidity | 60 | 43200 | < th | dose dependent | sin | 13 | NA |
| 212 | 23.78 | radiation | 10 | 4320 | < th | dose dependent | sin | 16 | NA |
| 254 | 23.82 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 285 | 23.84 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 287 | 23.85 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 350 | 23.91 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 415 | 23.98 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 435 | 23.99 | humidity | 70 | 43200 | < th | dose dependent | no | NA | NA |
| 444 | 23.99 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 445 | 24.00 | radiation | 10 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 465 | 24.00 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 468 | 24.00 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 23 |
| 597 | 24.08 | radiation | 10 | 4320 | > th | dose independent | sin | 16 | NA |
| 661 | 24.12 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 681 | 24.13 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 705 | 24.16 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 715 | 24.17 | humidity | 60 | 43200 | < th | dose independent | sin | 12 | NA |
| 759 | 24.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 767 | 24.21 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 769 | 24.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 792 | 24.23 | humidity | 60 | 43200 | > th | dose independent | no | NA | NA |
| 803 | 24.24 | humidity | 60 | 43200 | > th | dose independent | sin | 12 | NA |
| 807 | 24.24 | humidity | 60 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 808 | 24.24 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 820 | 24.25 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 833 | 24.26 | humidity | 70 | 43200 | < th | dose independent | sin | 10 | NA |
| 840 | 24.26 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 864 | 24.28 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 893 | 24.29 | humidity | 70 | 43200 | < th | dose dependent | rect. | 18 | 12 |