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Os05g0583200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, BED-type predicted domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.43 (0.0349) R2 : 0.691
β1 : 1.48 (0.128) R2dD : 0.0944 R2D : 0.0686
β2 : 2.72 (0.091) R2dC : 0.61 R2C : 0.588
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.394 (0.0745) R2dN8 : 0.0254 R2N8 : -0.00444
σ : 0.656
deviance : 196.3
__
_____
C
peak time of C : 17.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.18 0.607 6.43 1.48 2.39 -0.553 1.44 -1.25 0.39 18.1 71.41 62 -- --
173.45 0.613 6.43 1.45 2.45 -0.524 1.66 -- 0.396 18 70.76 56 -- --
171.92 0.611 6.42 1.48 2.38 -0.577 -- -1.43 0.399 18.1 71.57 54 -- --
180.86 0.626 6.43 1.43 2.43 -0.581 -- -- 0.392 18.1 70 58 -- --
319.18 0.832 6.37 1.58 -- -2.05 -- -2.03 0.404 -- 75 424 -- --
186.18 0.64 6.44 1.49 2.71 -- 2.03 -- 0.386 17.6 -- -- -- --
196.3 0.656 6.43 1.48 2.72 -- -- -- 0.394 17.6 -- -- -- --
322.54 0.836 6.41 1.27 -- -2.19 -- -- 0.271 -- 75 445 -- --
235.13 0.714 6.44 -- 2.41 -0.624 -- -- 0.263 18.1 70.93 65 -- --
581.75 1.13 6.39 1.39 -- -- -- -- 0.328 -- -- -- -- --
254.08 0.746 6.47 -- 2.7 -- -- -- 0.229 17.6 -- -- -- --
363.79 0.888 6.45 -- -- -2.24 -- -- 0.0889 -- 73.91 424 -- --
632.87 1.17 6.43 -- -- -- -- -- 0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.72 humidity 70.0 90 > th dose independent rect. 4 16
2 158.83 humidity 50.0 10 > th dose dependent rect. 5 15
6 159.18 humidity 50.0 10 > th dose dependent rect. 5 17
15 160.26 radiation 10.0 270 < th dose independent rect. 3 16
16 160.32 radiation 20.0 270 < th dose dependent rect. 3 16
18 160.41 radiation 40.0 10 < th dose independent rect. 5 18
25 160.54 radiation 40.0 10 < th dose dependent rect. 5 18
28 160.61 radiation 40.0 270 < th dose dependent rect. 3 16
44 161.14 humidity 90.0 10 < th dose dependent rect. 8 10
45 161.18 humidity 90.0 10 < th dose dependent rect. 8 8
52 161.30 radiation 20.0 30 < th dose independent rect. 5 18
88 162.03 wind 7.0 270 < th dose independent rect. 7 20
96 162.14 radiation 40.0 270 < th dose dependent rect. 11 21
105 162.29 precipitation 0.1 43200 > th dose dependent rect. 17 4
106 162.31 radiation 20.0 270 < th dose independent rect. 11 21
108 162.32 precipitation 0.1 43200 > th dose dependent rect. 16 2
113 162.42 radiation 40.0 270 < th dose dependent rect. 15 16
114 162.44 wind 7.0 270 < th dose independent rect. 8 18
115 162.45 wind 7.0 10 < th dose independent rect. 8 21
116 162.45 radiation 40.0 270 < th dose independent rect. 10 22
125 162.65 humidity 50.0 270 > th dose dependent rect. 2 17
132 162.85 radiation 40.0 10 < th dose independent rect. 5 15
133 162.86 radiation 1.0 90 > th dose dependent rect. 8 10
146 162.89 atmosphere 995.0 270 > th dose dependent rect. 20 7
162 163.06 radiation 40.0 270 < th dose dependent rect. 13 19
186 163.20 atmosphere 1010.0 90 < th dose independent rect. 17 15
188 163.23 radiation 20.0 270 < th dose independent rect. 15 16
196 163.29 radiation 40.0 30 < th dose dependent rect. 5 15
228 163.43 humidity 60.0 10 > th dose dependent sin 23 NA
237 163.48 radiation 40.0 270 < th dose dependent rect. 2 12
255 163.67 wind 7.0 270 < th dose independent rect. 7 9
269 163.75 atmosphere 1010.0 270 < th dose independent rect. 15 17
283 163.83 radiation 1.0 30 > th dose independent rect. 8 11
306 163.88 radiation 40.0 270 < th dose dependent rect. 2 9
310 163.91 humidity 90.0 10 < th dose dependent sin 0 NA
311 163.92 wind 9.0 270 < th dose dependent rect. 7 8
321 163.97 radiation 20.0 30 < th dose independent rect. 5 15
329 164.00 humidity 90.0 10 < th dose dependent rect. 8 13
334 164.02 humidity 90.0 10 < th dose dependent rect. 8 21
352 164.04 wind 7.0 43200 > th dose dependent rect. 16 3
357 164.06 precipitation 0.1 90 < th dose independent rect. 8 20
358 164.06 precipitation 0.1 90 < th dose dependent rect. 8 20
359 164.07 wind 7.0 43200 > th dose independent rect. 17 2
388 164.22 wind 7.0 43200 < th dose independent rect. 17 2
425 164.37 atmosphere 1000.0 270 > th dose independent rect. 20 7
454 164.47 radiation 10.0 270 < th dose independent rect. 3 5
477 164.55 radiation 10.0 270 < th dose dependent sin 2 NA
483 164.57 humidity 50.0 270 > th dose independent rect. 15 16
498 164.64 radiation 20.0 270 < th dose independent rect. 2 7
499 164.64 radiation 40.0 270 < th dose independent rect. 11 10
508 164.67 radiation 10.0 270 < th dose dependent rect. 3 8
517 164.69 radiation 10.0 270 < th dose independent rect. 3 12
527 164.73 temperature 30.0 270 < th dose independent rect. 2 17
529 164.74 radiation 20.0 43200 > th dose dependent rect. 16 1
547 164.75 precipitation 0.1 270 < th dose independent rect. 6 21
560 164.75 precipitation 0.1 270 < th dose dependent rect. 6 21
563 164.77 humidity 70.0 90 > th dose independent rect. 12 23
567 164.78 humidity 70.0 10 > th dose independent rect. 5 5
569 164.78 atmosphere 995.0 10 > th dose dependent rect. 23 6
588 164.86 atmosphere 1010.0 270 < th dose independent rect. 2 6
590 164.87 radiation 10.0 270 < th dose independent rect. 2 9
637 165.02 temperature 30.0 10 < th dose dependent rect. 22 7
654 165.05 temperature 10.0 10 > th dose dependent rect. 8 21
697 165.22 precipitation 0.1 43200 > th dose independent rect. 16 2
698 165.22 precipitation 0.1 43200 < th dose independent rect. 16 2
701 165.22 precipitation 0.1 43200 < th dose dependent rect. 16 2
709 165.26 humidity 50.0 90 > th dose independent rect. 17 15
766 165.40 radiation 10.0 270 > th dose independent rect. 16 22
792 165.50 precipitation 0.1 270 < th dose independent rect. 8 18
793 165.50 precipitation 0.1 270 < th dose dependent rect. 8 18
824 165.55 atmosphere 1010.0 270 < th dose independent rect. 3 4
827 165.55 wind 9.0 270 < th dose dependent rect. 7 19
887 165.73 radiation 10.0 30 > th dose dependent rect. 13 23
897 165.76 atmosphere 995.0 270 > th dose dependent rect. 22 3
920 165.81 humidity 80.0 10 < th dose independent rect. 8 10
949 165.90 precipitation 0.1 90 < th dose independent rect. 8 9
953 165.90 precipitation 0.1 90 < th dose dependent rect. 8 9
957 165.92 atmosphere 995.0 10 > th dose dependent rect. 20 9
960 165.93 temperature 30.0 270 < th dose independent rect. 15 16
964 165.94 radiation 10.0 270 < th dose independent sin 3 NA
967 165.94 humidity 80.0 14400 > th dose dependent rect. 24 4
971 165.95 atmosphere 1000.0 10 > th dose independent rect. 22 7
981 165.98 humidity 70.0 90 > th dose independent rect. 4 7
986 166.01 humidity 70.0 43200 > th dose independent rect. 11 1
998 166.04 humidity 70.0 90 < th dose independent sin 2 NA