FiT-DB / Search/ Help/ Sample detail

Os05g0583000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 34.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.0365) R2 : 0.287
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.629 (0.0879) R2dC : 0.0806 R2C : 0.0951
β3 : -0.94 (0.115) R2dE : 0.116 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.37 (0.0787) R2dN8 : 0.0454 R2N8 : 0.0605
σ : 0.681
deviance : 213.66
__
_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 31.18
memory length : 926
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.9 0.668 5.79 0.824 0.661 -1.01 0.655 1.15 0.375 12 30.95 1466 -- --
202.47 0.663 5.82 0.763 0.688 -0.962 0.607 -- 0.388 12 31.06 1509 -- --
203.69 0.665 5.79 0.866 0.66 -1.04 -- 1.25 0.378 12.2 31.02 1484 -- --
203.76 0.665 5.81 0.656 0.664 -0.913 -- -- 0.379 12.2 31 1488 -- --
225.92 0.7 5.81 0.844 -- -1.27 -- 1.41 0.358 -- 30.85 991 -- --
238.35 0.724 5.78 0.395 0.75 -- 0.769 -- 0.544 12.2 -- -- -- --
240.85 0.727 5.77 0.425 0.748 -- -- -- 0.549 12.4 -- -- -- --
225.79 0.7 5.82 0.618 -- -1.11 -- -- 0.365 -- 30.71 990 -- --
213.66 0.681 5.81 -- 0.629 -0.94 -- -- 0.37 12.9 31.18 926 -- --
276.04 0.776 5.79 0.4 -- -- -- -- 0.537 -- -- -- -- --
245.62 0.733 5.78 -- 0.742 -- -- -- 0.501 12.4 -- -- -- --
236.33 0.716 5.84 -- -- -1.04 -- -- 0.306 -- 31.1 969 -- --
280.26 0.781 5.8 -- -- -- -- -- 0.492 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.80 radiation 1.0 4320 > th dose independent rect. 18 11
2 188.95 radiation 1.0 4320 > th dose independent rect. 18 1
13 191.66 radiation 1.0 14400 < th dose dependent rect. 18 11
14 192.09 radiation 10.0 14400 < th dose dependent rect. 9 1
15 192.57 radiation 1.0 14400 < th dose dependent rect. 18 1
20 192.63 radiation 1.0 14400 < th dose independent rect. 18 7
24 192.69 radiation 1.0 14400 < th dose independent rect. 18 3
28 192.71 radiation 1.0 14400 < th dose independent rect. 18 1
31 192.74 radiation 1.0 43200 < th dose dependent rect. 4 1
40 193.58 radiation 1.0 43200 < th dose dependent rect. 21 8
46 194.55 precipitation 0.1 43200 > th dose dependent rect. 20 10
48 194.68 precipitation 0.1 43200 > th dose independent rect. 17 10
49 194.68 precipitation 0.1 43200 > th dose independent rect. 18 12
50 194.69 precipitation 0.1 43200 < th dose independent rect. 18 12
51 194.69 precipitation 0.1 43200 < th dose dependent rect. 18 12
52 194.70 precipitation 0.1 43200 > th dose independent rect. 20 10
54 194.72 precipitation 0.1 43200 < th dose independent rect. 17 10
55 194.72 precipitation 0.1 43200 < th dose dependent rect. 17 10
57 194.74 precipitation 0.1 43200 < th dose independent rect. 4 22
58 194.74 precipitation 0.1 43200 < th dose dependent rect. 4 22
60 194.75 precipitation 0.1 43200 > th dose independent rect. 4 22
63 194.76 precipitation 0.1 43200 < th dose independent rect. 20 10
65 194.76 precipitation 0.1 43200 < th dose dependent rect. 20 10
72 194.79 precipitation 0.1 43200 > th dose independent sin 13 NA
74 194.80 precipitation 0.1 43200 < th dose independent sin 13 NA
75 194.80 precipitation 0.1 43200 < th dose dependent sin 13 NA
77 194.88 precipitation 0.1 43200 > th dose independent rect. 19 5
79 194.90 precipitation 0.1 43200 > th dose independent rect. 20 23
84 194.91 precipitation 0.1 43200 < th dose independent rect. 20 23
86 194.91 precipitation 0.1 43200 < th dose dependent rect. 20 23
87 194.92 precipitation 0.1 43200 < th dose independent rect. 19 5
88 194.92 precipitation 0.1 43200 < th dose dependent rect. 19 5
89 194.93 precipitation 0.1 43200 < th dose independent rect. 4 19
90 194.93 precipitation 0.1 43200 < th dose dependent rect. 4 19
91 194.94 precipitation 0.1 43200 > th dose independent rect. 4 19
119 195.11 precipitation 0.1 43200 > th dose independent rect. 8 22
125 195.13 precipitation 0.1 43200 < th dose independent rect. 8 22
129 195.13 precipitation 0.1 43200 < th dose dependent rect. 8 22
138 195.17 precipitation 0.1 43200 < th dose independent rect. 14 23
140 195.17 precipitation 0.1 43200 < th dose dependent rect. 14 23
141 195.19 precipitation 0.1 43200 > th dose independent rect. 14 23
151 195.24 precipitation 0.1 43200 > th dose independent rect. 17 22
155 195.25 precipitation 0.1 43200 < th dose independent rect. 17 22
157 195.25 precipitation 0.1 43200 < th dose dependent rect. 17 22
167 195.29 precipitation 0.1 43200 < th dose independent rect. 24 23
168 195.29 precipitation 0.1 43200 < th dose dependent rect. 24 23
169 195.30 precipitation 0.1 43200 > th dose independent rect. 24 23
194 195.36 precipitation 0.1 43200 < th dose independent rect. 18 19
199 195.36 precipitation 0.1 43200 < th dose dependent rect. 18 19
211 195.38 precipitation 0.1 43200 > th dose independent rect. 18 19
223 195.42 precipitation 0.1 43200 > th dose dependent rect. 20 17
230 195.44 precipitation 0.1 43200 > th dose dependent rect. 20 7
238 195.47 precipitation 0.1 43200 > th dose independent no NA NA
239 195.47 precipitation 0.1 43200 < th dose independent no NA NA
249 195.47 precipitation 0.1 43200 < th dose dependent no NA NA
251 195.47 precipitation 0.1 43200 > th dose dependent rect. 20 19
269 195.54 precipitation 0.1 43200 > th dose independent rect. 20 17
273 195.54 precipitation 0.1 43200 > th dose dependent rect. 21 22
274 195.55 precipitation 0.1 43200 > th dose independent rect. 20 19
276 195.56 precipitation 0.1 43200 < th dose independent rect. 20 17
279 195.56 precipitation 0.1 43200 < th dose independent rect. 11 23
280 195.56 precipitation 0.1 43200 < th dose dependent rect. 20 17
281 195.56 precipitation 0.1 43200 < th dose dependent rect. 11 23
291 195.58 precipitation 0.1 43200 > th dose independent rect. 11 23
294 195.59 precipitation 0.1 43200 < th dose independent rect. 20 19
298 195.59 precipitation 0.1 43200 < th dose dependent rect. 20 19
321 195.64 temperature 20.0 43200 < th dose independent rect. 2 1
424 195.80 radiation 30.0 14400 > th dose independent rect. 7 1
451 195.82 temperature 20.0 43200 > th dose independent rect. 2 1
505 195.93 precipitation 0.1 43200 > th dose dependent rect. 18 12
578 196.15 radiation 10.0 14400 > th dose independent rect. 9 1
595 196.18 precipitation 0.1 43200 < th dose independent rect. 8 1
597 196.18 precipitation 0.1 43200 < th dose dependent rect. 8 1
608 196.20 wind 1.0 14400 > th dose independent rect. 18 7
619 196.21 precipitation 0.1 43200 > th dose dependent rect. 8 22
623 196.22 precipitation 0.1 43200 > th dose dependent rect. 18 21
632 196.24 precipitation 0.1 43200 > th dose dependent rect. 18 19
650 196.27 precipitation 0.1 43200 > th dose dependent rect. 4 23
653 196.29 precipitation 0.1 43200 > th dose independent rect. 8 1
654 196.29 precipitation 0.1 43200 > th dose dependent rect. 8 1
663 196.32 precipitation 0.1 43200 < th dose independent rect. 22 1
668 196.32 precipitation 0.1 43200 < th dose dependent rect. 22 1
674 196.34 precipitation 0.1 43200 > th dose independent rect. 22 1
677 196.34 precipitation 0.1 43200 > th dose dependent rect. 22 1
680 196.35 wind 1.0 43200 > th dose independent rect. 15 9
766 196.52 temperature 20.0 43200 < th dose independent rect. 23 10
776 196.53 precipitation 0.1 43200 < th dose independent rect. 4 15
781 196.53 precipitation 0.1 43200 < th dose dependent rect. 4 15
792 196.55 precipitation 0.1 43200 > th dose independent sin 0 NA
793 196.55 precipitation 0.1 43200 < th dose independent sin 0 NA
799 196.55 precipitation 0.1 43200 < th dose dependent sin 0 NA
805 196.56 precipitation 0.1 43200 > th dose independent rect. 4 15
810 196.57 precipitation 0.1 43200 > th dose dependent sin 12 NA
869 196.66 temperature 20.0 43200 > th dose independent rect. 21 10
890 196.69 precipitation 0.1 43200 > th dose dependent rect. 14 23
922 196.75 precipitation 0.1 43200 < th dose independent rect. 4 9
927 196.75 precipitation 0.1 43200 < th dose dependent rect. 4 9
930 196.76 temperature 20.0 43200 > th dose independent rect. 5 2
933 196.76 precipitation 0.1 43200 > th dose independent rect. 4 9
961 196.81 temperature 20.0 43200 < th dose independent rect. 5 2
973 196.81 precipitation 0.1 43200 > th dose dependent rect. 21 3
976 196.82 temperature 20.0 43200 < th dose independent sin 8 NA
988 196.84 temperature 20.0 43200 > th dose independent sin 8 NA
994 196.84 precipitation 0.1 43200 > th dose dependent rect. 24 23