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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0582600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S10, serine carboxypeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0423) R2 : 0.144
β1 : 0.096 (0.155) R2dD : 0.000744 R2D : 0.000104
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.43 (0.293) R2dE : 0.047 R2E : 0.0626
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.12 (1.18) R2dD*E : 0.0706 R2D*E : 0.0895
γ1 : -0.184 (0.0906) R2dN8 : 0.0104 R2N8 : 0.00425
σ : 0.79
deviance : 287.41
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 91
memory length : 30
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.35
open length of G : 1.39

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
283.29 0.791 3.06 0.083 0.218 1.24 0.786 -7.42 -0.188 4.37 90.91 34 2.37 1.39
307.14 0.816 3.08 0.115 0.23 1.52 0.132 -- -0.197 4.14 90.86 42 2.37 1.35
284.77 0.786 3.06 0.0854 0.229 1.27 -- -7.04 -0.187 4.22 90.93 30 2.36 1.4
307.18 0.816 3.08 0.112 0.231 1.52 -- -- -0.197 4.15 90.86 42 2.37 1.35
287.41 0.79 3.07 0.096 -- 1.43 -- -7.12 -0.184 -- 91 30 2.35 1.39
326.26 0.847 3.06 0.0919 0.373 -- -0.05 -- -0.14 3.95 -- -- -- --
326.27 0.846 3.06 0.0925 0.373 -- -- -- -0.139 3.95 -- -- -- --
309.91 0.82 3.08 0.123 -- 1.62 -- -- -0.199 -- 90.93 41 2.36 1.35
307.52 0.817 3.08 -- 0.234 1.51 -- -- -0.209 4.14 90.96 43 2.37 1.34
333.87 0.854 3.06 0.108 -- -- -- -- -0.129 -- -- -- -- --
326.5 0.845 3.07 -- 0.374 -- -- -- -0.15 3.94 -- -- -- --
310.31 0.82 3.08 -- -- 1.62 -- -- -0.209 -- 91 42 2.37 1.35
334.17 0.853 3.07 -- -- -- -- -- -0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.32 atmosphere 1005.0 30 > th dose dependent rect. 2 2
3 293.57 humidity 90.0 90 < th dose independent rect. 2 1
4 294.02 atmosphere 1000.0 90 > th dose independent rect. 3 23
5 294.08 atmosphere 1005.0 30 > th dose independent rect. 2 2
20 300.42 atmosphere 1000.0 10 < th dose independent rect. 1 9
30 301.10 atmosphere 1000.0 270 < th dose independent rect. 3 4
31 301.22 atmosphere 1000.0 270 < th dose independent rect. 1 7
32 301.25 atmosphere 1000.0 270 < th dose independent rect. 5 1
45 301.95 atmosphere 1000.0 10 < th dose independent rect. 4 6
68 302.40 wind 3.0 30 < th dose independent rect. 2 2
70 302.43 atmosphere 995.0 30 > th dose dependent rect. 4 22
86 303.59 atmosphere 1000.0 270 > th dose independent rect. 1 23
90 304.00 wind 1.0 90 > th dose independent rect. 2 1
93 304.10 atmosphere 1000.0 90 < th dose independent rect. 7 2
98 304.39 atmosphere 1000.0 270 > th dose independent rect. 3 10
135 305.45 atmosphere 1000.0 30 < th dose dependent rect. 5 5
162 305.96 atmosphere 1000.0 720 > th dose independent rect. 19 12
163 305.96 temperature 30.0 90 < th dose dependent rect. 2 1
164 305.98 atmosphere 1000.0 30 < th dose dependent rect. 1 10
166 306.06 atmosphere 1000.0 270 < th dose dependent rect. 5 2
171 306.17 temperature 30.0 1440 < th dose independent rect. 12 1
172 306.17 wind 7.0 30 < th dose dependent rect. 2 2
180 306.30 wind 1.0 30 > th dose independent rect. 4 22
188 306.41 temperature 20.0 10 < th dose independent rect. 4 1
202 306.80 precipitation 0.1 30 < th dose independent rect. 2 2
203 306.80 precipitation 0.1 30 < th dose dependent rect. 2 2
207 306.89 temperature 10.0 90 > th dose independent rect. 2 1
209 306.89 temperature 30.0 90 < th dose independent rect. 2 1
210 306.89 humidity 50.0 90 > th dose independent rect. 2 1
213 306.89 atmosphere 995.0 90 > th dose independent rect. 2 1
214 306.89 atmosphere 1010.0 90 < th dose independent rect. 2 1
216 306.89 radiation 1.0 90 < th dose independent rect. 2 1
222 306.89 temperature 10.0 90 > th dose independent rect. 3 23
223 306.89 radiation 1.0 90 < th dose dependent rect. 2 1
236 307.02 temperature 25.0 10 < th dose independent rect. 2 3
245 307.17 precipitation 0.1 30 < th dose independent rect. 4 22
246 307.17 precipitation 0.1 30 < th dose dependent rect. 4 22
251 307.23 atmosphere 1000.0 720 < th dose independent rect. 22 5
275 307.30 atmosphere 1000.0 720 < th dose independent rect. 23 3
296 307.55 wind 9.0 1440 < th dose independent rect. 3 2
297 307.55 temperature 10.0 1440 > th dose independent rect. 3 2
300 307.55 temperature 30.0 1440 < th dose independent rect. 3 2
304 307.55 humidity 50.0 1440 > th dose independent rect. 3 2
313 307.55 atmosphere 995.0 1440 > th dose independent rect. 3 2
314 307.55 radiation 20.0 1440 < th dose independent rect. 3 2
326 307.55 temperature 10.0 1440 > th dose independent rect. 5 22
341 307.72 humidity 50.0 30 > th dose independent rect. 4 22
376 308.02 atmosphere 1000.0 720 > th dose independent rect. 3 4
378 308.03 humidity 90.0 270 < th dose independent rect. 24 4
404 308.27 atmosphere 1000.0 270 < th dose independent sin 6 NA
406 308.30 temperature 30.0 1440 > th dose independent rect. 12 1
420 308.40 wind 9.0 30 < th dose independent rect. 4 22
423 308.44 temperature 30.0 10 < th dose dependent rect. 2 2
445 308.58 atmosphere 1000.0 270 > th dose independent sin 6 NA
453 308.67 atmosphere 1000.0 90 < th dose independent rect. 22 18
458 308.73 atmosphere 1010.0 90 < th dose dependent rect. 23 11
460 308.74 temperature 25.0 4320 > th dose dependent rect. 4 2
466 308.76 atmosphere 1010.0 10 < th dose dependent rect. 23 12
503 308.97 temperature 10.0 30 > th dose dependent rect. 2 2
511 309.03 atmosphere 1000.0 720 < th dose independent rect. 1 1
517 309.11 temperature 25.0 4320 > th dose independent rect. 3 2
541 309.23 atmosphere 1000.0 720 < th dose independent sin 10 NA
564 309.39 radiation 1.0 10 < th dose independent rect. 6 2
575 309.42 atmosphere 995.0 30 > th dose dependent rect. 4 10
578 309.45 humidity 50.0 90 > th dose dependent rect. 2 1
582 309.48 atmosphere 1000.0 720 > th dose independent rect. 16 12
588 309.55 atmosphere 1000.0 720 > th dose independent sin 10 NA
589 309.55 atmosphere 1000.0 10 > th dose independent rect. 21 15
622 309.73 precipitation 0.1 10 > th dose independent rect. 5 3
640 309.73 precipitation 0.1 10 > th dose dependent rect. 5 3
655 309.73 atmosphere 995.0 720 > th dose dependent rect. 19 12
657 309.74 precipitation 0.1 90 > th dose independent rect. 7 1
663 309.74 precipitation 0.1 90 > th dose dependent rect. 7 1
685 309.80 atmosphere 1015.0 90 < th dose dependent rect. 23 22
691 309.82 radiation 1.0 10 < th dose dependent rect. 6 6
694 309.84 radiation 1.0 10 < th dose dependent rect. 6 2
727 309.89 atmosphere 1015.0 720 < th dose dependent rect. 22 5
728 309.89 atmosphere 1005.0 720 < th dose dependent rect. 20 13
730 309.90 atmosphere 1000.0 270 > th dose independent rect. 23 12
733 309.91 atmosphere 1000.0 720 > th dose independent rect. 23 5
736 309.91 atmosphere 1000.0 720 < th dose dependent rect. 22 4
750 309.93 precipitation 0.1 30 > th dose independent rect. 7 7
761 309.93 precipitation 0.1 30 > th dose dependent rect. 7 7
771 309.94 atmosphere 1000.0 10 > th dose independent rect. 21 17
807 310.09 atmosphere 1010.0 10 < th dose dependent rect. 23 22
857 310.24 atmosphere 1000.0 720 > th dose independent rect. 19 20
891 310.30 atmosphere 1005.0 720 < th dose dependent sin 10 NA
928 310.38 atmosphere 1005.0 270 < th dose dependent sin 7 NA
932 310.39 temperature 25.0 720 < th dose independent rect. 17 11
938 310.40 precipitation 0.1 10 > th dose independent rect. 7 1
976 310.40 temperature 30.0 1440 < th dose independent rect. 3 10
986 310.40 precipitation 0.1 10 > th dose dependent rect. 7 1