FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0582500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S10, serine carboxypeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0438) R2 : 0.305
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.07 (0.217) R2dE : 0.306 R2E : 0.305
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0288 (0.0924) R2dN8 : 0.00019 R2N8 : -0.00063
σ : 0.823
deviance : 312.47
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.34
memory length : 240
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.69
open length of G : 5.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
300.11 0.814 3.24 0.619 0.28 2.95 -1.36 0.304 0.14 20 27.91 270 0.951 6.93
299.57 0.806 3.24 0.648 0.265 3.06 -1.56 -- 0.159 19.7 27.6 272 1.06 6.72
302.06 0.809 3.25 0.601 0.225 3.02 -- 1.43 0.103 20.7 27.63 280 1.18 6.38
305.78 0.814 3.24 0.654 0.171 2.98 -- -- 0.129 20.6 27.45 274 1.22 6.34
300.25 0.807 3.24 0.597 -- 3.11 -- 1.27 0.0909 -- 27.05 251 1.48 5.57
377.93 0.911 3.24 0.529 1.07 -- 1.09 -- -0.00334 6.19 -- -- -- --
380.74 0.914 3.24 0.539 1.08 -- -- -- -0.00794 6.02 -- -- -- --
302.49 0.81 3.24 0.631 -- 3.14 -- -- 0.112 -- 27.06 244 1.58 5.45
312.61 0.823 3.26 -- 0.126 3.21 -- -- 0.0263 18.5 27.67 254 1.57 5.28
440.86 0.981 3.26 0.57 -- -- -- -- 0.0165 -- -- -- -- --
388.39 0.922 3.26 -- 1.09 -- -- -- -0.0679 5.99 -- -- -- --
312.47 0.823 3.26 -- -- 3.07 -- -- 0.0288 -- 27.34 240 1.69 5.27
449.44 0.99 3.27 -- -- -- -- -- -0.0467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 304.30 temperature 30.0 270 < th dose dependent rect. 1 7
3 304.74 temperature 30.0 270 < th dose dependent rect. 2 4
7 305.88 temperature 20.0 270 < th dose independent rect. 2 4
44 314.16 temperature 20.0 270 > th dose independent rect. 21 14
164 323.87 temperature 25.0 90 < th dose dependent rect. 3 16
195 325.44 temperature 30.0 30 < th dose dependent rect. 5 15
227 326.70 temperature 10.0 270 > th dose dependent rect. 21 14
249 327.24 wind 1.0 270 > th dose independent rect. 2 4
256 327.49 temperature 20.0 270 > th dose independent sin 6 NA
274 327.97 temperature 30.0 90 < th dose dependent rect. 14 18
319 329.13 temperature 20.0 270 < th dose independent sin 7 NA
338 329.69 temperature 10.0 90 > th dose dependent rect. 7 21
340 329.70 temperature 20.0 270 < th dose independent rect. 1 14
362 330.02 radiation 1.0 270 < th dose dependent rect. 3 5
387 330.80 temperature 30.0 90 < th dose dependent sin 6 NA
449 331.97 wind 5.0 270 < th dose independent rect. 2 4
459 332.09 temperature 25.0 30 < th dose dependent sin 1 NA
470 332.25 temperature 25.0 90 < th dose dependent sin 3 NA
490 332.55 radiation 10.0 43200 < th dose dependent rect. 22 6
554 333.72 temperature 10.0 43200 > th dose independent rect. 9 9
561 333.85 radiation 1.0 270 < th dose independent rect. 3 4
603 334.39 atmosphere 995.0 270 > th dose dependent rect. 3 3
607 334.41 wind 1.0 30 > th dose independent rect. 4 4
621 334.58 temperature 15.0 90 > th dose dependent sin 6 NA
625 334.63 precipitation 0.1 270 < th dose independent rect. 6 20
626 334.63 precipitation 0.1 270 < th dose dependent rect. 6 20
632 334.69 radiation 20.0 90 < th dose independent rect. 4 4
641 334.78 radiation 30.0 90 < th dose dependent rect. 4 4
699 335.55 temperature 10.0 43200 > th dose independent rect. 9 7
703 335.62 precipitation 0.1 270 < th dose independent rect. 2 4
704 335.62 precipitation 0.1 270 < th dose dependent rect. 2 4
731 335.84 wind 9.0 270 < th dose independent rect. 6 20
746 335.97 temperature 10.0 270 > th dose independent rect. 2 4
748 335.97 temperature 30.0 270 < th dose independent rect. 2 4
749 335.97 humidity 50.0 270 > th dose independent rect. 2 4
752 335.97 atmosphere 995.0 270 > th dose independent rect. 2 4
753 335.97 atmosphere 1015.0 270 < th dose independent rect. 2 4
754 335.97 radiation 20.0 270 < th dose independent rect. 2 4
757 335.97 temperature 10.0 270 > th dose independent rect. 6 20
788 336.16 atmosphere 1015.0 270 < th dose independent rect. 6 20
831 336.59 wind 1.0 270 > th dose independent rect. 14 16
855 336.82 precipitation 0.1 90 < th dose independent rect. 6 23
856 336.82 precipitation 0.1 90 < th dose dependent rect. 6 23
904 337.30 radiation 1.0 270 < th dose dependent rect. 3 15
917 337.43 humidity 60.0 90 > th dose dependent rect. 4 4
938 337.64 humidity 50.0 270 > th dose independent rect. 14 16
954 337.77 wind 5.0 90 < th dose independent rect. 5 1
959 337.81 temperature 20.0 90 > th dose independent rect. 7 21